G4KDTree.hh

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// Author: Mathieu Karamitros
 
// The code is developed in the framework of the ESA AO7146
//
// We would be very happy hearing from you, send us your feedback! :)
//
// In order for Geant4-DNA to be maintained and still open-source,
// article citations are crucial.
// If you use Geant4-DNA chemistry and you publish papers about your software,
// in addition to the general paper on Geant4-DNA:
//
// Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
//
// we would be very happy if you could please also cite the following
// reference papers on chemistry:
//
// J. Comput. Phys. 274 (2014) 841-882
// Prog. Nucl. Sci. Tec. 2 (2011) 503-508
 
#ifndef G4KDTREE_HH
#define G4KDTREE_HH 1
 
#include <vector>
#include "G4Types.hh"
#include "G4KDNode.hh"
#include "G4KDTreeResult.hh"
 
class G4KDMap;
template <typename PointT>
class G4KDNode;
 
//__________________________________
// Methods to act on kdnode
// Methods defined in G4KDNode.cc :
void InactiveNode(G4KDNode_Base*);
void Free(G4KDNode_Base*&);
//__________________________________
 
/**
 * G4KDTree is used by the ITManager to locate the neareast neighbours.
 * A kdtree sorts out node in such a way that it reduces the number of node
 * check. The results of this search can be retrieved by G4KDTreeResultHandle.
 */
class G4KDTree
{
  friend class G4KDNode_Base;
 
 public:
  G4KDTree(std::size_t dim = 3);
  ~G4KDTree();
  void Clear();
 
  void Print(std::ostream& out = G4cout) const;
  void Build();
  void NoticeNodeDeactivation()
  {
    fNbActiveNodes--;
    if(fNbActiveNodes <= 0)
    {
      Clear();
    }
  }
  void NoticeNodeDeactivation() {…}
 
  std::size_t GetDim() const { return fDim; }
  G4int GetNbNodes() const { return fNbNodes; }
  G4KDNode_Base* GetRoot() { return fRoot; }
 
  template <typename PointT>
  G4KDNode_Base* InsertMap(PointT* pos);
 
  // Insert and attache the data to a node at the specified position
  // In return, it gives you the corresponding node
  template <typename PointT>
  G4KDNode_Base* Insert(PointT* pos);  // 3D
 
  template <typename PointT>
  G4KDNode_Base* Insert(const PointT& pos);  // 3D
 
  /* Find one of the nearest nodes from the specified point.
   *
   * This function returns a pointer to a result set with at most one element.
   */
  template <typename Position>
  G4KDTreeResultHandle Nearest(const Position& pos);
  G4KDTreeResultHandle Nearest(G4KDNode_Base* node);
 
  /* Find any nearest nodes from the specified point within a range.
   *
   * This function returns a pointer to a result set, which can be manipulated
   * by the G4KDTreeResult.
   * The returned pointer can be null as an indication of an error. Otherwise
   * a valid result set is always returned which may contain 0 or more elements.
   */
  template <typename Position>
  G4KDTreeResultHandle NearestInRange(const Position& pos, const G4double& range);
  G4KDTreeResultHandle NearestInRange(G4KDNode_Base* node, const G4double& range);
 
  void* operator new(std::size_t);
  void operator delete(void*);
 
 protected:
  //______________________________________________________________________
  class HyperRect
  {
   public:
    HyperRect(std::size_t dim)
      : fDim(dim)
      , fMin(new G4double[fDim])
      , fMax(new G4double[fDim])
    {}
    HyperRect(std::size_t dim) {…}
 
    template <typename Position>
    void SetMinMax(const Position& min, const Position& max)
    {
      for(std::size_t i = 0; i < fDim; ++i)
      {
        fMin[i] = min[(G4int)i];
        fMax[i] = max[(G4int)i];
      }
    }
    void SetMinMax(const Position& min, const Position& max) {…}
 
    ~HyperRect()
    {
      delete[] fMin;
      delete[] fMax;
    }
    ~HyperRect() {…}
 
    HyperRect(const HyperRect& rect)
    {
      fDim = rect.fDim;
      fMin = new G4double[fDim];
      fMax = new G4double[fDim];
 
      for(std::size_t i = 0; i < fDim; ++i)
      {
        fMin[i] = rect.fMin[i];
        fMax[i] = rect.fMax[i];
      }
    }
    HyperRect(const HyperRect& rect) {…}
 
    template <typename Position>
    void Extend(const Position& pos)
    {
      for(G4int i = 0; i < (G4int)fDim; ++i)
      {
        if(pos[i] < fMin[i])
        {
          fMin[i] = pos[i];
        }
        if(pos[i] > fMax[i])
        {
          fMax[i] = pos[i];
        }
      }
    }
    void Extend(const Position& pos) {…}
 
    template <typename Position>
    G4bool CompareDistSqr(const Position& pos, const G4double* bestmatch)
    {
      G4double result = 0;
 
      for(std::size_t i = 0; i < fDim; ++i)
      {
        if(pos[(G4int)i] < fMin[i])
        {
          result += sqr(fMin[i] - pos[(G4int)i]);
        }
        else if(pos[(G4int)i] > fMax[i])
        {
          result += sqr(fMax[i] - pos[(G4int)i]);
        }
 
        if(result >= *bestmatch){
          return false;
        }
      }
 
      return true;
    }
    G4bool CompareDistSqr(const Position& pos, const G4double* bestmatch) {…}
 
    std::size_t GetDim() { return fDim; }
    G4double* GetMin() { return fMin; }
    G4double* GetMax() { return fMax; }
 
   protected:
    std::size_t fDim;
    G4double *fMin, *fMax; /* minimum/maximum coords */
 
   private:
    // should not be used
    HyperRect& operator=(const HyperRect& rhs)
    {
      if (this == &rhs) return *this;
      return *this;
    }
  };
  class HyperRect {…};
 
 protected:
  void __InsertMap(G4KDNode_Base* node);
  void __Clear_Rec(G4KDNode_Base* node);
 
  template <typename Position>
  G4int __NearestInRange(G4KDNode_Base* node, const Position& pos,
                       const G4double& range_sq, const G4double& range,
                       G4KDTreeResult& list, G4int ordered,
                       G4KDNode_Base* source_node = nullptr);
 
  template <typename Position>
  void __NearestToPosition(G4KDNode_Base* node, const Position& pos,
                           G4KDNode_Base*& result, G4double* result_dist_sq,
                           HyperRect* fRect);
 
  template <typename Position>
  void __NearestToNode(G4KDNode_Base* source_node, G4KDNode_Base* node,
                       const Position& pos, std::vector<G4KDNode_Base*>& result,
                       G4double* result_dist_sq, HyperRect* fRect, G4int& nbresult);
 
 protected:
  HyperRect* fRect     = nullptr;
  G4KDNode_Base* fRoot = nullptr;
  std::size_t fDim;
  G4int fNbNodes       = 0;
  G4int fNbActiveNodes = 0;
  G4KDMap* fKDMap;
  static G4Allocator<G4KDTree>*& fgAllocator();
};
class G4KDTree {…};
 
#include "G4KDTree.icc"
 
#endif  // G4KDTREE_HH