MediumGas.cc

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#include <algorithm>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include <ctime>
#include <fstream>
#include <iomanip>
#include <iostream>
#include <sstream>
#include <numeric>
 
#include "Garfield/FundamentalConstants.hh"
#include "Garfield/GarfieldConstants.hh"
#include "Garfield/MediumGas.hh"
#include "Garfield/OpticalData.hh"
#include "Garfield/Utilities.hh"
 
namespace {
 
std::string FmtFloat(const double x, const unsigned int width = 15,
                        const unsigned int precision = 8) {
  char buffer[256];
  std::snprintf(buffer, width + 1, "%*.*E", width, precision, x);
  return std::string(buffer);
}
 
std::string FmtInt(const int n, const unsigned int width) {
  char buffer[256];
  std::snprintf(buffer, width + 1, "%*d", width, n);
  return std::string(buffer);
}
 
void PrintArray(const std::vector<double>& values, std::ofstream& outfile,
                int& col, const int ncols) {
  for (const auto value : values) {
    outfile << FmtFloat(value);
    ++col;
    if (col % ncols == 0) outfile << "\n";
  }
}
 
void PrintExtrapolation(const std::pair<unsigned int, unsigned int>& extr) {
  std::cout << "        Low field extrapolation: ";
  if (extr.first == 0)
    std::cout << " constant\n";
  else if (extr.first == 1)
    std::cout << " linear\n";
  else if (extr.first == 2)
    std::cout << " exponential\n";
  else
    std::cout << " unknown\n";
  std::cout << "        High field extrapolation: ";
  if (extr.second == 0)
    std::cout << " constant\n";
  else if (extr.second == 1)
    std::cout << " linear\n";
  else if (extr.second == 2)
    std::cout << " exponential\n";
  else
    std::cout << " unknown\n";
}
 
void PrintAbsentInNew(const std::string& par) {
  std::cout << "    Warning: The " << par << " is absent in the dataset "
            << "to be added; data reset.\n";
}
 
void PrintAbsentInExisting(const std::string& par) {
  std::cout << "    Warning: The " << par << " is absent in the existing data; "
            << "new data not used.\n";
}
 
bool Similar(const double v1, const double v2, const double eps) {
  const double dif = v1 - v2;
  const double sum = fabs(v1) + fabs(v2);
  return fabs(dif) < std::max(eps * sum, Garfield::Small);
} 
 
int Equal(const std::vector<double>& fields1, 
          const std::vector<double>& fields2, const double eps) {
  if (fields1.size() != fields2.size()) return 0;
  const unsigned int n = fields1.size();
  for (unsigned int i = 0; i < n; ++i) {
    if (!Similar(fields1[i], fields2[i], eps)) return 0;
  }
  return 1;
}
 
int FindIndex(const double field, const std::vector<double>& fields,
              const double eps) {
 
  const int n = fields.size();
  for (int i = 0; i < n; ++i) {
    if (Similar(field, fields[i], eps)) return i;
  }
  return -1;
}
 
void ResizeA(std::vector<std::vector<std::vector<double> > >& tab,
             const int ne, const int nb, const int na) {
  if (tab.empty()) return;
  tab.resize(na, 
             std::vector<std::vector<double> >(nb, 
                                               std::vector<double>(ne, 0.)));
}
 
}
 
namespace Garfield {
 
MediumGas::MediumGas()
    : Medium(), m_pressureTable(m_pressure), m_temperatureTable(m_temperature) {
  m_className = "MediumGas";
 
  m_gas.fill("");
  m_fraction.fill(0.);
  m_atWeight.fill(0.);
  m_atNum.fill(0.);
  // Default gas mixture: pure argon
  m_gas[0] = "Ar";
  m_fraction[0] = 1.;
  m_name = m_gas[0];
  GetGasInfo(m_gas[0], m_atWeight[0], m_atNum[0]);
 
  m_rPenningGas.fill(0.);
  m_lambdaPenningGas.fill(0.);
 
  m_isChanged = true;
 
  EnableDrift();
  EnablePrimaryIonisation();
}
 
bool MediumGas::SetComposition(const std::string& gas1, const double f1,
                               const std::string& gas2, const double f2,
                               const std::string& gas3, const double f3,
                               const std::string& gas4, const double f4,
                               const std::string& gas5, const double f5,
                               const std::string& gas6, const double f6) {
  std::array<std::string, 6> gases = {gas1, gas2, gas3, gas4, gas5, gas6};
  std::array<double, 6> fractions = {f1, f2, f3, f4, f5, f6};
 
  // Make a backup copy of the gas composition.
  const std::array<std::string, m_nMaxGases> gasOld = m_gas;
  const unsigned int nComponentsOld = m_nComponents;
 
  // Reset all transport parameters.
  ResetTables();
  // Force a recalculation of the collision rates.
  m_isChanged = true;
 
  m_nComponents = 0;
  m_gas.fill("");
  m_fraction.fill(0.);
  m_atWeight.fill(0.);
  m_atNum.fill(0.);
  for (unsigned int i = 0; i < 6; ++i) {
    if (fractions[i] < Small) continue;
    // Find the gas name corresponding to the input string.
    const std::string gasname = GetGasName(gases[i]);
    if (!gasname.empty()) {
      m_gas[m_nComponents] = gasname;
      m_fraction[m_nComponents] = fractions[i];
      ++m_nComponents;
    }
  }
 
  // Check if at least one valid ingredient was specified.
  if (m_nComponents == 0) {
    std::cerr << m_className << "::SetComposition:\n"
              << "    Error setting the composition. No valid components.\n";
    return false;
  }
 
  // Establish the name.
  m_name = "";
  double sum = 0.;
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    if (i > 0) m_name += "/";
    m_name += m_gas[i];
    sum += m_fraction[i];
  }
  // Normalise the fractions to one.
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    m_fraction[i] /= sum;
  }
 
  // Set the atomic weight and number.
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    GetGasInfo(m_gas[i], m_atWeight[i], m_atNum[i]);
  }
 
  // Print the composition.
  std::cout << m_className << "::SetComposition:\n    " << m_name;
  if (m_nComponents > 1) {
    std::cout << " (" << m_fraction[0] * 100;
    for (unsigned int i = 1; i < m_nComponents; ++i) {
      std::cout << "/" << m_fraction[i] * 100;
    }
    std::cout << ")";
  }
  std::cout << "\n";
 
 
  // Copy the previous Penning transfer parameters.
  std::array<double, m_nMaxGases> rPenningGasOld;
  std::array<double, m_nMaxGases> lambdaPenningGasOld;
  rPenningGasOld.fill(0.);
  lambdaPenningGasOld.fill(0.);
  rPenningGasOld.swap(m_rPenningGas);
  lambdaPenningGasOld.swap(m_lambdaPenningGas);
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    for (unsigned int j = 0; j < nComponentsOld; ++j) {
      if (m_gas[i] != gasOld[j]) continue;
      if (rPenningGasOld[j] < Small) continue;
      m_rPenningGas[i] = rPenningGasOld[j];
      m_lambdaPenningGas[i] = lambdaPenningGasOld[i];
      std::cout << m_className << "::SetComposition:\n"
                << "    Using Penning transfer parameters for " << m_gas[i]
                << " from previous mixture.\n"
                << "      r      = " << m_rPenningGas[i] << "\n"
                << "      lambda = " << m_lambdaPenningGas[i] << " cm\n";
    }
  }
  return true;
}
 
void MediumGas::GetComposition(std::string& gas1, double& f1, std::string& gas2,
                               double& f2, std::string& gas3, double& f3,
                               std::string& gas4, double& f4, std::string& gas5,
                               double& f5, std::string& gas6, double& f6) {
  gas1 = m_gas[0];
  gas2 = m_gas[1];
  gas3 = m_gas[2];
  gas4 = m_gas[3];
  gas5 = m_gas[4];
  gas6 = m_gas[5];
  f1 = m_fraction[0];
  f2 = m_fraction[1];
  f3 = m_fraction[2];
  f4 = m_fraction[3];
  f5 = m_fraction[4];
  f6 = m_fraction[5];
}
 
void MediumGas::GetComponent(const unsigned int i, std::string& label,
                             double& f) {
  if (i >= m_nComponents) {
    std::cerr << m_className << "::GetComponent: Index out of range.\n";
    label = "";
    f = 0.;
    return;
  }
 
  label = m_gas[i];
  f = m_fraction[i];
}
 
void MediumGas::SetAtomicNumber(const double z) {
  std::cerr << m_className << "::SetAtomicNumber:\n"
            << "    Effective Z cannot be changed directly to " << z << ".\n"
            << "    Use SetComposition to define the gas mixture.\n";
}
 
void MediumGas::SetAtomicWeight(const double a) {
  std::cerr << m_className << "::SetAtomicWeight:\n"
            << "    Effective A cannot be changed directly to " << a << ".\n"
            << "    Use SetComposition to define the gas mixture.\n";
}
 
void MediumGas::SetNumberDensity(const double n) {
  std::cerr << m_className << "::SetNumberDensity:\n"
            << "    Density cannot directly be changed to " << n << ".\n"
            << "    Use SetTemperature and SetPressure.\n";
}
 
void MediumGas::SetMassDensity(const double rho) {
  std::cerr << m_className << "::SetMassDensity:\n"
            << "    Density cannot directly be changed to " << rho << ".\n"
            << "    Use SetTemperature, SetPressure and SetComposition.\n";
}
 
double MediumGas::GetAtomicWeight() const {
  // Effective A, weighted by the fractions of the components.
  double a = 0.;
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    a += m_atWeight[i] * m_fraction[i];
  }
  return a;
}
 
double MediumGas::GetNumberDensity() const {
  // Ideal gas law.
  return LoschmidtNumber * (m_pressure / AtmosphericPressure) *
         (ZeroCelsius / m_temperature);
}
 
double MediumGas::GetMassDensity() const {
  return GetNumberDensity() * GetAtomicWeight() * AtomicMassUnit;
}
 
double MediumGas::GetAtomicNumber() const {
  // Effective Z, weighted by the fractions of the components.
  double z = 0.;
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    z += m_atNum[i] * m_fraction[i];
  }
  return z;
}
 
bool MediumGas::LoadGasFile(const std::string& filename) {
 
  // -----------------------------------------------------------------------
  //    GASGET
  // -----------------------------------------------------------------------
 
  std::ifstream gasfile;
  // Open the file.
  gasfile.open(filename.c_str());
  // Make sure the file could be opened.
  if (!gasfile.is_open()) {
    std::cerr << m_className << "::LoadGasFile:\n"
              << "    Cannot open file " << filename << ".\n";
    return false;
  }
  std::cout << m_className << "::LoadGasFile: Reading " << filename << ".\n";
 
  ResetTables();
 
  // Start reading the data.
  if (m_debug) std::cout << m_className << "::LoadGasFile: Reading header.\n";
  int version = 12;
  // GASOK bits
  std::bitset<20> gasok;
  // Gas composition
  constexpr int nMagboltzGases = 60;
  std::vector<double> mixture(nMagboltzGases, 0.);
  if (!ReadHeader(gasfile, version, gasok, m_tab2d, mixture, 
                  m_eFields, m_bFields, m_bAngles, m_excLevels, m_ionLevels)) {
    gasfile.close();
    return false;
  }
  std::cout << m_className << "::LoadGasFile: Version " << version << "\n";
 
  // Check the gas mixture.
  std::vector<std::string> gasnames;
  std::vector<double> percentages;
  if (!GetMixture(mixture, version, gasnames, percentages)) {
    std::cerr << m_className << "::LoadGasFile:\n    "
              << "Cannot determine the gas composition.\n";
    gasfile.close();
    return false;
  }
 
  m_name = "";
  m_nComponents = gasnames.size();
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    if (i > 0) m_name += "/";
    m_name += gasnames[i];
    m_gas[i] = gasnames[i];
    m_fraction[i] = percentages[i] / 100.;
    GetGasInfo(m_gas[i], m_atWeight[i], m_atNum[i]);
  }
  std::cout << m_className << "::LoadGasFile:\n"
            << "    Gas composition set to " << m_name;
  if (m_nComponents > 1) {
    std::cout << " (" << m_fraction[0] * 100;
    for (unsigned int i = 1; i < m_nComponents; ++i) {
      std::cout << "/" << m_fraction[i] * 100;
    }
    std::cout << ")";
  }
  std::cout << "\n";
 
  const int nE = m_eFields.size();
  const int nB = m_bFields.size();
  const int nA = m_bAngles.size();
  if (m_debug) {
    std::cout << m_className << "::LoadGasFile:\n    " << nE
              << " electric field(s), " << nB
              << " magnetic field(s), " << nA << " angle(s).\n";
  }
 
  // Decode the GASOK bits.
  // GASOK(I)   : .TRUE. if present
  // (1)  electron drift velocity || E
  // (2)  ion mobility,
  // (3)  longitudinal diffusion || E
  // (4)  Townsend coefficient,
  // (5)  cluster size distribution.
  // (6)  attachment coefficient,
  // (7)  Lorentz angle,
  // (8)  transverse diffusion || ExB and Bt
  // (9)  electron drift velocity || Bt
  // (10) electron drift velocity || ExB
  // (11) diffusion tensor
  // (12) ion dissociation
  // (13) allocated for SRIM data (not used)
  // (14) allocated for HEED data (not used)
  // (15) excitation rates
  // (16) ionisation rates
 
  if (gasok[0]) Init(nE, nB, nA, m_eVelE, 0.);
  if (gasok[1]) Init(nE, nB, nA, m_iMob, 0.);
  if (gasok[2]) Init(nE, nB, nA, m_eDifL, 0.);
  if (gasok[3]) {
    Init(nE, nB, nA, m_eAlp, -30.);
    Init(nE, nB, nA, m_eAlp0, -30.);
  }
  if (gasok[5]) Init(nE, nB, nA, m_eAtt, -30.);
  if (gasok[6]) Init(nE, nB, nA, m_eLor, -30.);
  if (gasok[7]) Init(nE, nB, nA, m_eDifT, 0.);
  if (gasok[8]) Init(nE, nB, nA, m_eVelB, 0.);
  if (gasok[9]) Init(nE, nB, nA, m_eVelX, 0.);
  if (gasok[10]) Init(nE, nB, nA, 6, m_eDifM, 0.);
  if (gasok[11]) Init(nE, nB, nA, m_iDis, -30.);
  if (gasok[14]) Init(nE, nB, nA, m_excLevels.size(), m_excRates, 0.);
  if (gasok[15]) Init(nE, nB, nA, m_ionLevels.size(), m_ionRates, 0.);
 
  // Force re-initialisation of collision rates etc.
  m_isChanged = true;
 
  if (m_debug) {
    const std::string fmt = m_tab2d ? "3D" : "1D";
    std::cout << m_className << "::LoadGasFile: Reading " << fmt << " table.\n";
  }
 
  // Drift velocity along E, Bt and ExB
  double ve = 0., vb = 0., vx = 0.;
  // Lorentz angle
  double lor = 0.;
  // Longitudinal and transverse diffusion coefficients
  double dl = 0., dt = 0.;
  // Townsend and attachment coefficients
  double alpha = 0., alpha0 = 0., eta = 0.;
  // Ion mobility and dissociation coefficient
  double mu = 0., dis = 0.;
  // Diffusion tensor.
  std::array<double, 6> diff;
  // Excitation and ionization rates.
  const unsigned int nexc = m_excLevels.size();
  std::vector<double> rexc(nexc, 0.);
  const unsigned int nion = m_ionLevels.size();
  std::vector<double> rion(nion, 0.);
  for (int i = 0; i < nE; i++) {
    for (int j = 0; j < nA; j++) {
      for (int k = 0; k < nB; k++) {
        if (m_tab2d) {
          ReadRecord3D(gasfile, ve, vb, vx, dl, dt, alpha, alpha0, eta, mu, 
                       lor, dis, diff, rexc, rion);
        } else {
          ReadRecord1D(gasfile, ve, vb, vx, dl, dt, alpha, alpha0, eta, mu, 
                       lor, dis, diff, rexc, rion);
        }
        if (!m_eVelE.empty()) m_eVelE[j][k][i] = ve;
        if (!m_eVelB.empty()) m_eVelB[j][k][i] = vb;
        if (!m_eVelX.empty()) m_eVelX[j][k][i] = vx;
        if (!m_eDifL.empty()) m_eDifL[j][k][i] = dl;
        if (!m_eDifT.empty()) m_eDifT[j][k][i] = dt;
        if (!m_eAlp.empty()) {
          m_eAlp[j][k][i] = alpha;
          m_eAlp0[j][k][i] = alpha0;
        }
        if (!m_eAtt.empty()) m_eAtt[j][k][i] = eta;
        if (!m_iMob.empty()) m_iMob[j][k][i] = mu;
        if (!m_eLor.empty()) m_eLor[j][k][i] = lor;
        if (!m_iDis.empty()) m_iDis[j][k][i] = dis;
        if (!m_eDifM.empty()) {
          for (int l = 0; l < 6; l++) {
            m_eDifM[l][j][k][i] = diff[l];
          }
        }
        if (!m_excRates.empty()) {
          for (unsigned int l = 0; l < nexc; ++l) {
            m_excRates[l][j][k][i] = rexc[l];
          }
        }
        if (!m_ionRates.empty()) {
          for (unsigned int l = 0; l < nion; ++l) {
            m_ionRates[l][j][k][i] = rion[l];
          }
        }
      }
    }
  }
 
  // Extrapolation methods
  std::array<unsigned int, 13> extrapH = {{0}};
  std::array<unsigned int, 13> extrapL = {{1}};
  // Interpolation methods
  std::array<unsigned int, 13> interp = {{2}};
  // Ion diffusion coefficients.
  double ionDiffL = 0.;
  double ionDiffT = 0.;
  // Gas pressure [Torr] and temperature [K].
  double pgas = 0.;
  double tgas = 0.;
  // Moving on to the file footer
  gasfile.ignore(std::numeric_limits<std::streamsize>::max(), '\n');
  if (m_debug) std::cout << m_className << "::LoadGasFile: Reading footer.\n";
  ReadFooter(gasfile, extrapH, extrapL, interp, 
             m_eThrAlp, m_eThrAtt, m_iThrDis, ionDiffL, ionDiffT, pgas, tgas);
  gasfile.close();
 
  // Decrement the threshold indices (compatibility with Fortran).
  if (m_eThrAlp > 0) --m_eThrAlp;
  if (m_eThrAtt > 0) --m_eThrAtt;
  if (m_iThrDis > 0) --m_iThrDis;
 
  // Set the reference pressure and temperature.
  if (pgas > 0.) m_pressure = m_pressureTable = pgas;
  if (tgas > 0.) m_temperature = m_temperatureTable = tgas;
 
  // Multiply the E/p values by the pressure.
  for (auto& field : m_eFields) field *= m_pressureTable;
 
  // Scale the parameters.
  const double sqrp = sqrt(m_pressureTable);
  const double logp = log(m_pressureTable);
  for (int i = nE; i--;) {
    for (int j = nA; j--;) {
      for (int k = nB; k--;) {
        if (!m_eDifL.empty()) m_eDifL[j][k][i] /= sqrp;
        if (!m_eDifT.empty()) m_eDifT[j][k][i] /= sqrp;
        if (!m_eDifM.empty()) {
          for (int l = 6; l--;) m_eDifM[l][j][k][i] /= m_pressureTable;
        }
        if (!m_eAlp.empty()) {
          m_eAlp[j][k][i] += logp;
          m_eAlp0[j][k][i] += logp;
        }
        if (!m_eAtt.empty()) m_eAtt[j][k][i] += logp;
        if (!m_iDis.empty()) m_iDis[j][k][i] += logp;
        /*
        for (auto& exc : m_excRates) {
          exc[j][k][i] /= m_pressureTable;
        }
        for (auto& ion : m_ionRates) {
          ion[j][k][i] /= m_pressureTable;
        }
        */
      }
    }
  }
 
  // Decode the extrapolation and interpolation tables.
  m_extrVel = {extrapL[0], extrapH[0]};
  // Indices 1 and 2 correspond to velocities along Bt and ExB.
  m_extrDif = {extrapL[3], extrapH[3]};
  m_extrAlp = {extrapL[4], extrapH[4]};
  m_extrAtt = {extrapL[5], extrapH[5]};
  m_extrMob = {extrapL[6], extrapH[6]};
  m_extrLor = {extrapL[7], extrapH[7]};
  // Index 8: transverse diffusion.
  m_extrDis = {extrapL[9], extrapH[9]};
  // Index 10: diff. tensor
  m_extrExc = {extrapL[11], extrapH[11]};
  m_extrIon = {extrapL[12], extrapH[12]};
  m_intpVel = interp[0];
  m_intpDif = interp[3];
  m_intpAlp = interp[4];
  m_intpAtt = interp[5];
  m_intpMob = interp[6];
  m_intpLor = interp[7];
  m_intpDis = interp[9];
  m_intpExc = interp[11];
  m_intpIon = interp[12];
 
  // Ion diffusion
  if (ionDiffL > 0.) Init(nE, nB, nA, m_iDifL, ionDiffL);
  if (ionDiffT > 0.) Init(nE, nB, nA, m_iDifT, ionDiffT);
 
  if (m_debug) std::cout << m_className << "::LoadGasFile: Done.\n";
 
  return true;
}
 
bool MediumGas::ReadHeader(std::ifstream& gasfile, int& version,
  std::bitset<20>& gasok, bool& is3d, std::vector<double>& mixture,
  std::vector<double>& efields, std::vector<double>& bfields, 
  std::vector<double>& angles, std::vector<ExcLevel>& excLevels,
  std::vector<IonLevel>& ionLevels) {
 
  gasok.reset();
  bool done = false;
  while (!done) {
    char line[256];
    gasfile.getline(line, 256);
    const bool quotes = (strstr(line, "\"") != NULL);
    if (strncmp(line, " The gas tables follow:", 8) == 0 ||
        strncmp(line, "The gas tables follow:", 7) == 0) {
      done = true;
      break;
    }
    char* token = strtok(line, " :,%");
    while (token) {
      if (strcmp(token, "Version") == 0) {
        token = strtok(NULL, " :,%");
        version = atoi(token);
        // Check the version number.
        if (version != 10 && version != 11 && version != 12) {
          std::cerr << m_className << "::ReadHeader:\n"
                    << "    The file has version number " << version << ".\n"
                    << "    Files written in this format cannot be read.\n";
          return false;
        }
      } else if (strcmp(token, "GASOK") == 0) {
        // Get the GASOK bits indicating if a parameter
        // is present in the table (T) or not (F).
        token = strtok(NULL, " :,%\t");
        token = strtok(NULL, " :,%\t");
        std::string okstr(token);
        if (m_debug) std::cout << "    GASOK bits: " << okstr << "\n";
        if (okstr.size() < 20) {
          std::cerr << m_className << "::ReadHeader:\n"
                    << "    Unexpected size of GASOK string (" 
                    << okstr.size() << ").\n";
          return false;
        }
        for (unsigned int i = 0; i < 20; ++i) {
          if (okstr[i] == 'T') gasok.set(i);
        }
      } else if (strcmp(token, "Identifier") == 0) {
        // Get the identification string.
        std::string identifier = "";
        token = strtok(NULL, "\n");
        if (token != NULL) identifier += token;
        if (m_debug) std::cout << "    Identifier: " << identifier << "\n";
      } else if (strcmp(token, "Dimension") == 0) {
        token = strtok(NULL, " :,%\t");
        if (strcmp(token, "F") == 0) {
          is3d = false;
        } else {
          is3d = true;
        }
        token = strtok(NULL, " :,%\t");
        const int nE = atoi(token);
        // Check the number of E points.
        if (nE <= 0) {
          std::cerr << m_className << "::ReadHeader:\n"
                    << "    Number of E fields out of range.\n";
          return false;
        }
        token = strtok(NULL, " :,%\t");
        const int nA = atoi(token);
        // Check the number of angles.
        if (is3d && nA <= 0) {
          std::cerr << m_className << "::ReadHeader:\n"
                    << "    Number of E-B angles out of range.\n";
          return false;
        }
        token = strtok(NULL, " :,%\t");
        const int nB = atoi(token);
        // Check the number of B points.
        if (is3d && nB <= 0) {
          std::cerr << m_className << "::ReadHeader:\n"
                    << "    Number of B fields out of range.\n";
          return false;
        }
        efields.resize(nE);
        angles.resize(nA);
        bfields.resize(nB); 
        // Fill in the excitation/ionisation structs
        // Excitation
        token = strtok(NULL, " :,%\t");
        const int nexc = atoi(token);
        // Ionization
        token = strtok(NULL, " :,%\t");
        const int nion = atoi(token);
        if (m_debug) {
          std::cout << "    " << nexc << " excitations, " << nion
                    << " ionisations.\n";
        }
      } else if (strcmp(token, "E") == 0) {
        token = strtok(NULL, " :,%");
        if (strncmp(token, "fields", 6) == 0) {
          const int nE = efields.size();
          for (int i = 0; i < nE; ++i) gasfile >> efields[i];
        }
      } else if (strcmp(token, "E-B") == 0) {
        token = strtok(NULL, " :,%");
        if (strncmp(token, "angles", 6) == 0) {
          const int nA = angles.size();
          for (int i = 0; i < nA; ++i) gasfile >> angles[i];
        }
      } else if (strcmp(token, "B") == 0) {
        token = strtok(NULL, " :,%");
        if (strncmp(token, "fields", 6) == 0) {
          double bstore = 0.;
          const int nB = bfields.size();
          for (int i = 0; i < nB; i++) {
            gasfile >> bstore;
            bfields[i] = bstore / 100.;
          }
        }
      } else if (strcmp(token, "Mixture") == 0) {
        const unsigned int nMagboltzGases = mixture.size();
        for (unsigned int i = 0; i < nMagboltzGases; ++i) {
          gasfile >> mixture[i];
        }
      } else if (strcmp(token, "Excitation") == 0) {
        // Skip number.
        token = strtok(NULL, " :,%");
        ExcLevel exc;
        // Get label.
        if (quotes) {
          token = strtok(NULL, "\"");
          token = strtok(NULL, "\"");
        } else {
          token = strtok(NULL, " :,%");
        }
        exc.label = token;
        // Get energy.
        token = strtok(NULL, " :,%");
        exc.energy = atof(token);
        // Get Penning probability.
        token = strtok(NULL, " :,%");
        exc.prob = atof(token);
        exc.rms = 0.;
        exc.dt = 0.;
        if (version >= 11) {
          // Get Penning rms distance.
          token = strtok(NULL, " :,%");
          if (token) {
            exc.rms = atof(token);
            // Get decay time.
            token = strtok(NULL, " :,%");
            if (token) exc.dt = atof(token);
          }
        }
        excLevels.push_back(std::move(exc));
      } else if (strcmp(token, "Ionisation") == 0) {
        // Skip number.
        token = strtok(NULL, " :,%");
        // Get label.
        IonLevel ion;
        if (quotes) {
          token = strtok(NULL, "\"");
          token = strtok(NULL, "\"");
        } else {
          token = strtok(NULL, " :,%");
        }
        ion.label += token;
        // Get energy.
        token = strtok(NULL, " :,%");
        ion.energy = atof(token);
        ionLevels.push_back(std::move(ion));
      }
      token = strtok(NULL, " :,%");
    }
  }
  return true;
}
 
void MediumGas::ReadRecord3D(std::ifstream& gasfile, 
  double& ve, double& vb, double& vx, double& dl, double& dt, 
  double& alpha, double& alpha0, double& eta, double& mu, double& lor,
  double& dis, std::array<double, 6>& dif, 
  std::vector<double>& rexc, std::vector<double>& rion) {
 
  // Drift velocity along E, Bt and ExB
  gasfile >> ve >> vb >> vx;
  // Convert from cm / us to cm / ns.
  ve *= 1.e-3;
  vb *= 1.e-3;
  vx *= 1.e-3;
  // Longitudinal and transverse diffusion coefficients
  gasfile >> dl >> dt;
  // Townsend and attachment coefficients
  gasfile >> alpha >> alpha0 >> eta;
  // Ion mobility
  gasfile >> mu;
  // Convert from cm2 / (V us) to cm2 / (V ns)
  mu *= 1.e-3;
  // Lorentz angle
  gasfile >> lor;
  // Ion dissociation
  gasfile >> dis;
  // Diffusion tensor
  for (int l = 0; l < 6; l++) gasfile >> dif[l];
  // Excitation rates
  const unsigned int nexc = rexc.size();
  for (unsigned int l = 0; l < nexc; ++l) gasfile >> rexc[l];
  // Ionization rates
  const unsigned int nion = rion.size();
  for (unsigned int l = 0; l < nion; ++l) gasfile >> rion[l];
}
 
void MediumGas::ReadRecord1D(std::ifstream& gasfile, 
  double& ve, double& vb, double& vx, double& dl, double& dt, 
  double& alpha, double& alpha0, double& eta, double& mu, double& lor,
  double& dis, std::array<double, 6>& dif, 
  std::vector<double>& rexc, std::vector<double>& rion) {
 
  double waste = 0.;
  gasfile >> ve >> waste >> vb >> waste >> vx >> waste;
  ve *= 1.e-3;
  vb *= 1.e-3;
  vx *= 1.e-3;
  gasfile >> dl >> waste >> dt >> waste;
  gasfile >> alpha >> waste >> alpha0 >> eta >> waste;
  gasfile >> mu >> waste;
  mu *= 1.e-3;
  gasfile >> lor >> waste;
  gasfile >> dis >> waste;
  for (int j = 0; j < 6; j++) gasfile >> dif[j] >> waste;
  const unsigned int nexc = rexc.size();
  for (unsigned int j = 0; j < nexc; ++j) gasfile >> rexc[j] >> waste;
  const unsigned int nion = rion.size();
  for (unsigned int j = 0; j < nion; ++j) gasfile >> rion[j] >> waste;
}
 
void MediumGas::ReadFooter(std::ifstream& gasfile,
  std::array<unsigned int, 13>& extrapH,
  std::array<unsigned int, 13>& extrapL,
  std::array<unsigned int, 13>& interp, 
  unsigned int& thrAlp, unsigned int& thrAtt, unsigned int& thrDis, 
  double& ionDiffL, double& ionDiffT,
  double& pgas, double& tgas) {
 
  bool done = false;
  while (!done) {
    char line[256];
    gasfile.getline(line, 256);
    char* token = strtok(line, " :,%=\t");
    while (token) {
      if (strcmp(token, "H") == 0) {
        token = strtok(NULL, " :,%=\t");
        for (int i = 0; i < 13; i++) {
          token = strtok(NULL, " :,%=\t");
          if (token != NULL) extrapH[i] = atoi(token);
        }
      } else if (strcmp(token, "L") == 0) {
        token = strtok(NULL, " :,%=\t");
        for (int i = 0; i < 13; i++) {
          token = strtok(NULL, " :,%=\t");
          if (token != NULL) extrapL[i] = atoi(token);
        }
      } else if (strcmp(token, "Thresholds") == 0) {
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) thrAlp = atoi(token);
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) thrAtt = atoi(token);
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) thrDis = atoi(token);
      } else if (strcmp(token, "Interp") == 0) {
        for (int i = 0; i < 13; i++) {
          token = strtok(NULL, " :,%=\t");
          if (token != NULL) interp[i] = atoi(token);
        }
      } else if (strcmp(token, "A") == 0) {
        token = strtok(NULL, " :,%=\t");
        // Parameter for energy loss distribution, currently not used
        // double a;
        // if (token != NULL) a = atof(token);
      } else if (strcmp(token, "Z") == 0) {
        // Parameter for energy loss distribution, currently not used
        token = strtok(NULL, " :,%=\t");
        // double z;
        // if (token != NULL) z = atof(token);
      } else if (strcmp(token, "EMPROB") == 0) {
        // Parameter for energy loss distribution, currently not used
        token = strtok(NULL, " :,%=\t");
        // double emprob;
        // if (token != NULL) emprob = atof(token);
      } else if (strcmp(token, "EPAIR") == 0) {
        // Parameter for energy loss distribution, currently not used
        token = strtok(NULL, " :,%=\t");
        // double epair;
        // if (token != NULL) epair = atof(token);
      } else if (strcmp(token, "Ion") == 0) {
        // Ion diffusion coefficients
        token = strtok(NULL, " :,%=\t");
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) ionDiffL = atof(token);
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) ionDiffT = atof(token);
      } else if (strcmp(token, "CMEAN") == 0) {
        // Cluster parameter, currently not used
        token = strtok(NULL, " :,%=\t");
        // double clsPerCm;
        // if (token != NULL) clsPerCm = atof(token);
      } else if (strcmp(token, "RHO") == 0) {
        // Parameter for energy loss distribution, currently not used
        token = strtok(NULL, " :,%=\t");
        // double rho;
        // if (token != NULL) rho = atof(token);
      } else if (strcmp(token, "PGAS") == 0) {
        // Pressure [Torr]
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) pgas = atof(token);
      } else if (strcmp(token, "TGAS") == 0) {
        // Temperature [K]
        token = strtok(NULL, " :,%=\t");
        if (token != NULL) tgas = atof(token);
        done = true;
        break;
      } else {
        done = true;
        break;
      }
      token = strtok(NULL, " :,%=\t");
    }
  }
}
 
bool MediumGas::GetMixture(const std::vector<double>& mixture,
  const int version, std::vector<std::string>& gasnames,
  std::vector<double>& percentages) const {
 
  gasnames.clear();
  percentages.clear();
  const unsigned int nMagboltzGases = mixture.size();
  for (unsigned int i = 0; i < nMagboltzGases; ++i) {
    if (mixture[i] < Small) continue;
    const std::string gasname = GetGasName(i + 1, version);
    if (gasname.empty()) {
      std::cerr << m_className << "::GetMixture:\n"
                << "    Unknown gas (gas number " << i + 1 << ").\n";
      return false;
    }
    gasnames.push_back(gasname);
    percentages.push_back(mixture[i]);
  }
  if (gasnames.size() > m_nMaxGases) {
    std::cerr << m_className << "::GetMixture:\n"
              << "    Gas mixture has " << gasnames.size() << " components.\n"
              << "    Number of gases is limited to " << m_nMaxGases << ".\n";
    return false;
  } else if (gasnames.empty()) {
    std::cerr << m_className << "::GetMixture:\n"
              << "    Gas mixture is not defined (zero components).\n";
    return false;
  }
  double sum = std::accumulate(percentages.begin(), percentages.end(), 0.);
  if (sum != 100.) {
    std::cout << m_className << "::GetMixture:\n"
              << "    Renormalizing the percentages.\n";
    for (auto& percentage : percentages) percentage *= 100. / sum;
  }
  return true;
}
 
bool MediumGas::MergeGasFile(const std::string& filename,
                             const bool replaceOld) {
 
  // -----------------------------------------------------------------------
  //    GASMRG - Merges gas data from a file with existing gas tables.
  //    (Last changed on 16/ 2/11.)
  // -----------------------------------------------------------------------
 
  constexpr double eps = 1.e-3;
 
  std::ifstream gasfile;
  // Open the file.
  gasfile.open(filename.c_str());
  // Make sure the file could be opened.
  if (!gasfile.is_open()) {
    std::cerr << m_className << "::MergeGasFile:\n"
              << "    Cannot open file " << filename << ".\n";
    return false;
  }
 
  int version = 12;
  std::bitset<20> gasok;
  bool is3d = false;
  constexpr int nMagboltzGases = 60;
  std::vector<double> mixture(nMagboltzGases, 0.);
  std::vector<double> efields;
  std::vector<double> bfields;
  std::vector<double> angles;
  std::vector<ExcLevel> excLevels;
  std::vector<IonLevel> ionLevels;
  if (!ReadHeader(gasfile, version, gasok, is3d, mixture, efields, bfields,
                  angles, excLevels, ionLevels)) {
    std::cerr << m_className << "::MergeGasFile: Error reading header.\n",
    gasfile.close();
    return false;
  } 
  // Check the version.
  if (version != 12) {
    std::cout << m_className << "::MergeGasFile:\n    "
              << "This dataset cannot be read because of a change in format.\n";
    gasfile.close();
    return false;
  }
 
  // Check the gas composition.
  std::vector<std::string> gasnames;
  std::vector<double> percentages;
  if (!GetMixture(mixture, version, gasnames, percentages)) {
    std::cerr << m_className << "::MergeGasFile:\n    "
              << "Cannot determine the gas composition.\n";
    gasfile.close();
    return false;
  }
  if (m_nComponents != gasnames.size()) {
    std::cerr << m_className << "::MergeGasFile:\n    "
              << "Composition of the dataset differs from the present one.\n";
    gasfile.close();
    return false;
  }
 
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    const auto it = std::find(gasnames.begin(), gasnames.end(), m_gas[i]);
    if (it == gasnames.end()) {
      std::cerr << m_className << "::MergeGasFile:\n    "
                << "Composition of the dataset differs from the present one.\n";
      gasfile.close();
      return false;
    }
    const double f2 = m_fraction[i];
    const double f1 = 0.01 * percentages[it - gasnames.begin()];
    if (fabs(f1 - f2) > 1.e-6 * (1. + fabs(f1) + fabs(f2))) {
      std::cerr << m_className << "::MergeGasFile:\n    "
                << "Percentages of " << m_gas[i] << " differ.\n";
      gasfile.close();
      return false;
    }
  }
 
  // Check that the excitations and ionisations match.
  const unsigned int nexc = excLevels.size();
  const unsigned int nion = ionLevels.size();
  bool excMatch = (m_excLevels.size() == nexc);
  if (excMatch) {
    for (unsigned int i = 0; i < nexc; ++i) {
      if (m_excLevels[i].label == excLevels[i].label) continue;
      excMatch = false;
      break;
    }
  } 
  bool ionMatch = (m_ionLevels.size() == nion);
  if (ionMatch) {
    for (unsigned int i = 0; i < nion; ++i) {
      if (m_ionLevels[i].label == ionLevels[i].label) continue;
      ionMatch = false;
      break;
    }
  } 
 
  // Drift velocity along E, Bt and ExB
  double ve = 0., vb = 0., vx = 0.;
  // Lorentz angle
  double lor = 0.;
  // Longitudinal and transverse diffusion coefficients
  double dl = 0., dt = 0.;
  // Townsend and attachment coefficients
  double alpha = 0., alpha0 = 0., eta = 0.;
  // Ion mobility and dissociation coefficient
  double mu = 0., dis = 0.;
  // Diffusion tensor.
  std::array<double, 6> diff;
  // Excitation and ionization rates.
  std::vector<double> rexc(nexc, 0.);
  std::vector<double> rion(nion, 0.);
  // Loop through the gas tables to fast-forward to the footer.
  const unsigned int nNewE = efields.size();
  const unsigned int nNewB = bfields.size();
  const unsigned int nNewA = angles.size();
  for (unsigned int i = 0; i < nNewE; i++) {
    for (unsigned int j = 0; j < nNewA; j++) {
      for (unsigned int k = 0; k < nNewB; k++) {
        if (m_tab2d) {
          ReadRecord3D(gasfile, ve, vb, vx, dl, dt, alpha, alpha0, eta, mu, 
                       lor, dis, diff, rexc, rion);
        } else {
          ReadRecord1D(gasfile, ve, vb, vx, dl, dt, alpha, alpha0, eta, mu, 
                       lor, dis, diff, rexc, rion);
        }
      }
    }
  }
 
  // Extrapolation methods
  std::array<unsigned int, 13> extrapH = {{0}};
  std::array<unsigned int, 13> extrapL = {{1}};
  // Interpolation methods
  std::array<unsigned int, 13> interp = {{2}};
  // Thresholds.
  unsigned int thrAlp = 0, thrAtt = 0, thrDis = 0;
  // Ion diffusion coefficients.
  double ionDiffL = 0., ionDiffT = 0.;
  // Gas pressure [Torr] and temperature [K].
  double pgas = 0., tgas = 0.;
  // Read the footer.
  gasfile.ignore(std::numeric_limits<std::streamsize>::max(), '\n');
  ReadFooter(gasfile, extrapH, extrapL, interp, thrAlp, thrAtt, thrDis, 
             ionDiffL, ionDiffT, pgas, tgas);
 
  // Check the pressure and temperature.
  if (!Similar(pgas, m_pressureTable, eps)) {
    std::cerr << m_className << "::MergeGasFile:\n    "
              << "The gas pressure of the dataset to be read differs\n    " 
              << "from the current reference pressure; stop.\n";
    gasfile.close();
    return false;
  }
  if (!Similar(tgas, m_temperatureTable, eps)) {
    std::cerr << m_className << "::MergeGasFile:\n    "     
              << "The gas temperature of the dataset to be read differs\n    "
              << "from the current reference temperature; stop.\n";
    gasfile.close();
    return false;
  }
 
  // Go back to the start and re-read the header to get to the gas tables.
  gasfile.clear();
  gasfile.seekg(0);
  if (!ReadHeader(gasfile, version, gasok, is3d, mixture, efields, bfields,
                  angles, excLevels, ionLevels)) {
    std::cerr << m_className << "::MergeGasFile: Error re-reading header.\n",
    gasfile.close();
    return false;
  }
 
  // Multiply the E/p values by the pressure.
  for (auto& field : efields) field *= pgas;
 
  if (m_debug) {
    std::cout << m_className << "::MergeGasFile:\n    "
              << "Dataset to be merged has the following dimensions:\n    "
              << "3D = " << is3d << " nE = " << nNewE << ", nB = " << nNewB 
              << ", nA = " << nNewA << ", nExc = "
              << excLevels.size() << ", nIon = " << ionLevels.size() << "\n";
  } 
 
  unsigned int nE = m_eFields.size();
  unsigned int nB = m_bFields.size();
  unsigned int nA = m_bAngles.size();
  // Determine which mode we have to use for the E field.
  const int iemode = Equal(efields, m_eFields, eps);
  // Determine which mode we have to use for the angles.
  const int iamode = Equal(angles, m_bAngles, eps);
  // Determine which mode we have to use for the B field.
  const int ibmode = Equal(bfields, m_bFields, eps);
  if (m_debug) {
    std::cout << m_className << "::MergeGasFile:\n";
    if (iemode == 0) std::cout << "    The E vectors differ.\n";
    else std::cout << "    The E vectors are identical.\n";
    if (iamode == 0) std::cout << "    The angle vectors differ.\n";
    else std::cout << "    The angle vectors are identical.\n";
    if (ibmode == 0) std::cout << "    The B vectors differ.\n";
    else std::cout << "    The B vectors are identical.\n";
  }
  // Ensure there is a common mode.
  if (iemode + iamode + ibmode < 2) {
    std::cerr << m_className << "::MergeGasFile:\n    Existing data and data "
              << "in the file don't have two common axes; not merged.\n";
    gasfile.close();
    return false;
  }
  // Decide whether we have to produce a 3D table or a 1D table.
  if ((is3d || ibmode * iamode == 0) && !m_tab2d) {
    if (m_debug) std::cout << "    Expanding existing table to 3D mode.\n";
    m_tab2d = true;
  }
 
  // Determine which data are currently present. 
  std::bitset<20> existing;
  GetGasBits(existing);
  // If the grids don't match, warn for data being lost in the merge.
  if (iemode * ibmode * iamode == 0) {
    // Check for data currently present which are absent in the new data.
    if (existing[0] && !gasok[0]) {
      existing.reset(0);
      m_eVelE.clear();
      PrintAbsentInNew("drift velocity");
    }
    if (existing[1] && !gasok[1]) {
      existing.reset(1);
      m_iMob.clear();
      PrintAbsentInNew("ion mobility");
    }
    if (existing[2] && !gasok[2]) {
      existing.reset(2);
      m_eDifL.clear();
      PrintAbsentInNew("longitudinal diffusion");
    }
    if (existing[3] && !gasok[3]) {
      existing.reset(3);
      m_eAlp.clear();
      PrintAbsentInNew("Townsend coefficient");
    }
    if (existing[5] && !gasok[5]) {
      existing.reset(5);
      m_eAtt.clear();
      PrintAbsentInNew("attachment coefficient");
    }
    if (existing[6] && !gasok[6]) {
      existing.reset(6);
      m_eLor.clear();
      PrintAbsentInNew("Lorentz angle");
    }
    if (existing[7] && !gasok[7]) {
      existing.reset(7);
      m_eDifT.clear();
      PrintAbsentInNew("transverse diffusion");
    }
    if (existing[8] && !gasok[8]) {
      existing.reset(8);
      m_eVelB.clear();
      PrintAbsentInNew("velocity along Bt");
    }
    if (existing[9] && !gasok[9]) {
      existing.reset(9);
      m_eVelX.clear();
      PrintAbsentInNew("velocity along ExB");
    }
    if (existing[10] && !gasok[10]) {
      existing.reset(10);
      m_eDifM.clear();
      PrintAbsentInNew("diffusion tensor");
    }
    if (existing[11] && !gasok[11]) {
      existing.reset(11);
      m_iDis.clear();
      PrintAbsentInNew("ion dissociation data");
    }
    if (existing[14] && !gasok[14]) {
      existing.reset(14);
      m_excLevels.clear();
      m_excRates.clear();
      PrintAbsentInNew("excitation data");
    }
    if (existing[15] && !gasok[15]) {
      existing.reset(15);
      m_ionLevels.clear();
      m_ionRates.clear();
      PrintAbsentInNew("ionisation data");
    }
    // And for data present in the file but not currently present.
    if (!existing[0] && gasok[0]) {
      gasok.reset(0);
      PrintAbsentInExisting("drift velocity");
    }
    if (!existing[1] && gasok[1]) {
      gasok.reset(1);
      PrintAbsentInExisting("ion mobility");
    }
    if (!existing[2] && gasok[2]) {
      gasok.reset(2);
      PrintAbsentInExisting("longitudinal diffusion");
    }
    if (!existing[3] && gasok[3]) {
      gasok.reset(3);
      PrintAbsentInExisting("Townsend coefficient");
    }
    if (!existing[5] && gasok[5]) {
      gasok.reset(5);
      PrintAbsentInExisting("attachment coefficient");
    }
    if (!existing[6] && gasok[6]) {
      gasok.reset(6);
      PrintAbsentInExisting("Lorentz angle");
    }
    if (!existing[7] && gasok[7]) {
      gasok.reset(7);
      PrintAbsentInExisting("transverse diffusion");
    }
    if (!existing[8] && gasok[8]) {
      gasok.reset(8);
      PrintAbsentInExisting("velocity along Bt");
    }
    if (!existing[9] && gasok[9]) {
      gasok.reset(9);
      PrintAbsentInExisting("velocity along ExB");
    }
    if (!existing[10] && gasok[10]) {
      gasok.reset(10);
      PrintAbsentInExisting("diffusion tensor");
    }
    if (!existing[11] && gasok[11]) {
      gasok.reset(11);
      PrintAbsentInExisting("ion dissociation data");
    }
    if (!existing[14] && gasok[14]) {
      gasok.reset(14);
      PrintAbsentInExisting("excitation data");
    }
    if (!existing[15] && gasok[15]) {
      gasok.reset(15);
      PrintAbsentInExisting("ionisation data");
    }
    if (existing[14] && gasok[14] && !excMatch) {
      std::cerr << "    Excitation levels of the two datasets don't match.\n"
                << "    Deleting excitation data.\n";
      m_excLevels.clear();
      m_excRates.clear();
      existing.reset(14);
      gasok.reset(14);
    }
    if (existing[15] && gasok[15] && !ionMatch) {
      std::cerr << "    Ionisation levels of the two datasets don't match.\n"
                << "    Deleting ionisation data.\n";
      m_ionLevels.clear();
      m_ionRates.clear();
      existing.reset(15);
      gasok.reset(15);
    }
    // TODO: if the existing dataset is 1D (B = 0), then there's no need 
    // to reset the Lorentz angle and the drift velocities || Bt and || ExB.
  } else {
    // If the grids are identical, initialise the tables that are only present 
    // in the new dataset but not in existing one.
    if (gasok[0] && !existing[0]) Init(nE, nB, nA, m_eVelE, 0.);
    if (gasok[1] && !existing[1]) Init(nE, nB, nA, m_iMob, 0.);
    if (gasok[2] && !existing[2]) Init(nE, nB, nA, m_eDifL, 0.);
    if (gasok[3] && !existing[3]) {
      Init(nE, nB, nA, m_eAlp, -30.);
      Init(nE, nB, nA, m_eAlp0, -30.);
    }
    if (gasok[5] && !existing[5]) Init(nE, nB, nA, m_eAtt, -30.);
    if (gasok[6] && !existing[6]) Init(nE, nB, nA, m_eLor, -30.);
    if (gasok[7] && !existing[7]) Init(nE, nB, nA, m_eDifT, 0.);
    if (gasok[8] && !existing[8]) Init(nE, nB, nA, m_eVelB, 0.);
    if (gasok[9] && !existing[9]) Init(nE, nB, nA, m_eVelX, 0.);
    if (gasok[10] && !existing[10]) Init(nE, nB, nA, 6, m_eDifM, 0.);
    if (gasok[11] && !existing[11]) Init(nE, nB, nA, m_iDis, -30.);
    if (gasok[14] && (!existing[14] || replaceOld)) {
      Init(nE, nB, nA, nexc, m_excRates, 0.);
    }
    if (gasok[15] && (!existing[15] || replaceOld)) {
      Init(nE, nB, nA, nion, m_ionRates, 0.);
    }
  }
 
  // Initialise the "new" flags.
  std::vector<bool> newE(nE, false);
  std::vector<bool> newA(nA, false);
  std::vector<bool> newB(nB, false);
  // Extend the existing tables.
  std::cout << m_className << "::MergeGasFile: Extending the tables.\n";
  // Insert room in the tables for new columns in E.
  if (iemode == 0) {
    // Loop over the new values.
    for (const auto efield : efields) {
      // Loop over the old values.
      bool found = false;
      for (unsigned int j = 0; j < nE; ++j) {
        // If it overlaps with existing E, either keep old or new data.
        if (Similar(efield, m_eFields[j], eps)) {
          if (replaceOld) {
            std::cout << "    Replacing existing data for E = " 
                      << m_eFields[j] << " V/cm by data from file.\n";
            m_eFields[j] = efield;
            newE[j] = true;
            ZeroRowE(j, nB, nA);
          } else {
            std::cout << "    Keeping existing data for E = " << m_eFields[j]
                      << " V/cm, not using data from the file.\n";
          }
          found = true;
          break;
        } else if (efield < m_eFields[j]) {
          // Otherwise shift all data at higher E values.
          if (m_debug) {
            std::cout << "    Inserting E = " << efield  
                      << " V/cm at slot " << j << ".\n";
          }
          InsertE(j, nE, nB, nA);
          m_eFields.insert(m_eFields.begin() + j, efield);
          newE.insert(newE.begin() + j, true);
          ZeroRowE(j, nB, nA);
          ++nE;
          found = true;
          break;
        }
      }
      if (found) continue;
      // If there is no higher E, then add the line at the end.
      if (m_debug) {
        std::cout << "    Adding E = " << efield << " V/cm at the end.\n";
      }
      InsertE(nE, nE, nB, nA);
      m_eFields.push_back(efield);
      newE.push_back(true);
      ZeroRowE(nE, nB, nA);
      ++nE;
    }
  }
  // Insert room in the tables for new columns in B.
  if (ibmode == 0) {
    // Loop over the new values. 
    for (const auto bfield : bfields) {
      // Loop over the old values.
      bool found = false;
      for (unsigned int j = 0; j < nB; ++j) {
        // If it overlaps with existing B, either keep old or new data.
        if (Similar(bfield, m_bFields[j], eps)) {
          if (replaceOld) {
            std::cout << "    Replacing old data for B = " << m_bFields[j] 
                      << " T by data from file.\n";
            m_bFields[j] = bfield;
            newB[j] = true;
            ZeroRowB(j, nE, nA);
          } else {
            std::cout << "    Keeping old data for B = " << m_bFields[j]
                      << " T, not using data from file.\n";
          }
          found = true;
          break;
        } else if (bfield < m_bFields[j]) {
          // Otherwise shift all data at higher B values.
          if (m_debug) {
              std::cout << "    Inserting B = " << bfield << " T at slot "
                        << j << ".\n";
          }
          InsertB(j, nE, nB, nA);
          m_bFields.insert(m_bFields.begin() + j, bfield);
          newB.insert(newB.begin() + j, true);
          ZeroRowB(j, nE, nA);
          ++nB;
          found = true;
          break;
        }
      }
      if (found) continue;
      // If there is no higher B, then add the line at the end.
      if (m_debug) {
        std::cout << "    Adding B = " << bfield << " T at the end.\n";
      }
      InsertB(nB, nE, nB, nA);
      m_bFields.push_back(bfield);
      newB.push_back(true);
      ZeroRowB(nB, nE, nA);
      ++nB;
    }
  }
  // Insert room in the tables for new columns in angle.
  if (iamode == 0) {
    // Loop over the new values.
    for (const auto angle : angles) {
      // Loop over the old values.
      bool found = false;
      for (unsigned int j = 0; j < nA; ++j) {
        // If it overlaps with an existing angle, either keep old or new data.
        if (Similar(angle, m_bAngles[j], eps)) {
          if (replaceOld) {
            std::cout << "    Replacing old data for angle(E,B) = " 
                      << m_bAngles[j] * RadToDegree
                      << " degrees by data from the file.\n";
            m_bAngles[j] = angle;
            newA[j] = true;
            ZeroRowA(j, nE, nB);
          } else {
            std::cout << "    Keeping old data for angle(E,B) = "
                      << m_bAngles[j] * RadToDegree
                      << " degrees, not using data from file.\n"; 
          }
          found = true;
          break;
        } else if (angle < m_bAngles[j]) {
          // Otherwise shift all data at higher angles.
          if (m_debug) {
            std::cout << "    Inserting angle = " << angle * RadToDegree
                      << " degrees at slot " << j << ".\n";
          }
          InsertA(j, nE, nB, nA);
          m_bAngles.insert(m_bAngles.begin() + j, angle);
          newA.insert(newA.begin() + j, true);
          ZeroRowA(j, nE, nB);
          ++nA;
          found = true;
          break;
        }
      }
      if (found) continue;
      // If there is no higher angle, then add the line at the end.
      if (m_debug) {
        std::cout << "    Adding angle = " << angle * RadToDegree
                  << " degrees at the end.\n";
      }
      InsertA(nA, nE, nB, nA);
      m_bAngles.push_back(angle);
      newA.push_back(true);
      ZeroRowA(nA, nE, nB);
      ++nA;
    }
  }
 
  const double sqrp = sqrt(pgas);
  const double logp = log(pgas);
 
  // Read the gas table.
  for (const auto efield : efields) {
    // Locate the index at which these values are to be stored.
    const int inde = FindIndex(efield, m_eFields, eps);
    for (const auto angle : angles) {
      const int inda = FindIndex(angle, m_bAngles, eps);
      for (const auto bfield : bfields) {
        // Read the record.
        if (is3d) {
          ReadRecord3D(gasfile, ve, vb, vx, dl, dt, alpha, alpha0, eta, mu, 
                       lor, dis, diff, rexc, rion);
        } else {
          ReadRecord1D(gasfile, ve, vb, vx, dl, dt, alpha, alpha0, eta, mu, 
                       lor, dis, diff, rexc, rion);
        }
        const int indb = FindIndex(bfield, m_bFields, eps);
        if (inde < 0 || inda < 0 || indb < 0) {
          std::cerr << m_className << "::MergeGasFile:\n    Unable to locate"
                    << " the (E,angle,B) insertion point; no gas data read.\n";
          std::cout << "BFIELD = " << bfield << ", IB = " << indb << "\n";
          ResetTables();
          gasfile.close();
          return false;
        }
        const bool update = newE[inde] || newA[inda] || newB[indb] || replaceOld; 
        // Store the data.
        if (gasok[0] && (update || !existing[0])) {
          m_eVelE[inda][indb][inde] = ve;
        }
        if (gasok[1] && (update || !existing[1])) {
          m_iMob[inda][indb][inde] = mu;
        }
        if (gasok[2] && (update || !existing[2])) {
          m_eDifL[inda][indb][inde] = dl / sqrp;
        }
        if (gasok[3] && (update || !existing[3])) {
          m_eAlp[inda][indb][inde] = alpha + logp;
          m_eAlp0[inda][indb][inde] = alpha0 + logp;
        }
        if (gasok[5] && (update || !existing[5])) {
          m_eAtt[inda][indb][inde] = eta + logp;
        }
        if (gasok[6] && (update || !existing[6])) {
          m_eLor[inda][indb][inde] = lor; 
        }
        if (gasok[7] && (update || !existing[7])) {
          m_eDifT[inda][indb][inde] = dt / sqrp;
        }
        if (gasok[8] && (update || !existing[8])) {
          m_eVelB[inda][indb][inde] = vb;
        }
        if (gasok[9] && (update || !existing[9])) {
          m_eVelX[inda][indb][inde] = vx;
        }
        if (gasok[10] && (update || !existing[10])) {
          for (unsigned int l = 0; l < 6; ++l) {
            m_eDifM[l][inda][indb][inde] = diff[l] / pgas;
          }
        }
        if (gasok[11] && (update || !existing[11])) {
          m_iDis[inda][indb][inde] = dis + logp;
        }
        if (gasok[14] && (update || !existing[14])) {
          for (unsigned int l = 0; l < nexc; ++l) {
            m_excRates[l][inda][indb][inde] = rexc[l];
          }
        }
        if (gasok[15] && (update || !existing[15])) {
          for (unsigned int l = 0; l < nion; ++l) {
            m_ionRates[l][inda][indb][inde] = rion[l];
          }
        }
      }
    }
  }
  // if (iemode + iamode + ibmode == 3) { ... }
  if (replaceOld) {
    if (m_debug) {
      std::cout << m_className << "::MergeGasFile: "
                << "Replacing extrapolation and interpolation data.\n";
    }
    if (gasok[0]) m_extrVel = {extrapL[0], extrapH[0]};
    if (gasok[1]) m_extrMob = {extrapL[6], extrapH[6]};
    if (gasok[2]) m_extrDif = {extrapL[3], extrapH[3]};
    if (gasok[3]) m_extrAlp = {extrapL[4], extrapH[4]};
    if (gasok[5]) m_extrAtt = {extrapL[5], extrapH[5]};
    if (gasok[6]) m_extrLor = {extrapL[7], extrapH[7]};
    if (gasok[11]) m_extrDis = {extrapL[9], extrapH[9]};
    if (gasok[14]) m_extrExc = {extrapL[11], extrapH[11]};
    if (gasok[15]) m_extrIon = {extrapL[12], extrapH[12]};
 
    if (gasok[0]) m_intpVel = interp[0];
    if (gasok[1]) m_intpMob = interp[6]; 
    if (gasok[2]) m_intpDif = interp[3];
    if (gasok[3]) m_intpAlp = interp[4];
    if (gasok[5]) m_intpAtt = interp[5];
    if (gasok[6]) m_intpLor = interp[7];
    if (gasok[11]) m_intpDis = interp[9];
    if (gasok[14]) m_intpExc = interp[11];
    if (gasok[15]) m_intpIon = interp[12];
 
    // Ion diffusion.
    if (m_debug && (ionDiffL > 0. || ionDiffT > 0.)) {
      std::cout << m_className << "::MergeGasFile: Replacing ion diffusion.\n";
    }
    if (ionDiffL > 0.) Init(nE, nB, nA, m_iDifL, ionDiffL);
    if (ionDiffT > 0.) Init(nE, nB, nA, m_iDifT, ionDiffT);
  }
  // Update the Townsend and attachment threshold indices.
  SetThreshold(m_eAlp);
  SetThreshold(m_eAtt);
  return true;
}
 
void MediumGas::InsertE(const int ie, const int ne, const int nb, 
                        const int na) {
  for (int k = 0; k < na; ++k) {
    for (int j = 0; j < nb; ++j) {
      if (!m_eVelE.empty()) m_eVelE[k][j].resize(ne + 1, 0.);
      if (!m_eVelB.empty()) m_eVelB[k][j].resize(ne + 1, 0.);
      if (!m_eVelX.empty()) m_eVelX[k][j].resize(ne + 1, 0.);
      if (!m_eDifL.empty()) m_eDifL[k][j].resize(ne + 1, 0.);
      if (!m_eDifT.empty()) m_eDifT[k][j].resize(ne + 1, 0.);
      if (!m_eAlp.empty())  m_eAlp[k][j].resize(ne + 1, 0.);
      if (!m_eAlp0.empty()) m_eAlp0[k][j].resize(ne + 1, 0.);
      if (!m_eAtt.empty())  m_eAtt[k][j].resize(ne + 1, 0.);
      if (!m_eLor.empty())  m_eLor[k][j].resize(ne + 1, 0.);
      if (!m_iMob.empty())  m_iMob[k][j].resize(ne + 1, 0.);
      if (!m_iDis.empty())  m_iDis[k][j].resize(ne + 1, 0.);
      if (!m_iDifL.empty()) m_iDifL[k][j].resize(ne + 1, 0.);
      if (!m_iDifT.empty()) m_iDifT[k][j].resize(ne + 1, 0.);
      for (auto& dif : m_eDifM) dif[k][j].resize(ne + 1, 0.);
      for (auto& exc : m_excRates) exc[k][j].resize(ne + 1, 0.);
      for (auto& ion : m_ionRates) ion[k][j].resize(ne + 1, 0.);
      for (int i = ne; i > ie; --i) {
        if (!m_eVelE.empty()) m_eVelE[k][j][i] = m_eVelE[k][j][i - 1];
        if (!m_eVelB.empty()) m_eVelB[k][j][i] = m_eVelB[k][j][i - 1];
        if (!m_eVelX.empty()) m_eVelX[k][j][i] = m_eVelX[k][j][i - 1];
        if (!m_eDifL.empty()) m_eDifL[k][j][i] = m_eDifL[k][j][i - 1];
        if (!m_eDifT.empty()) m_eDifT[k][j][i] = m_eDifT[k][j][i - 1];
        if (!m_eAlp.empty())  m_eAlp[k][j][i] = m_eAlp[k][j][i - 1];
        if (!m_eAlp0.empty()) m_eAlp0[k][j][i] = m_eAlp0[k][j][i - 1];
        if (!m_eAtt.empty())  m_eAtt[k][j][i] = m_eAtt[k][j][i - 1];
        if (!m_eLor.empty())  m_eLor[k][j][i] = m_eLor[k][j][i - 1];
        if (!m_iMob.empty())  m_iMob[k][j][i] = m_iMob[k][j][i - 1];
        if (!m_iDis.empty())  m_iDis[k][j][i] = m_iDis[k][j][i - 1];
        if (!m_iDifL.empty()) m_iDifL[k][j][i] = m_iDifL[k][j][i - 1];
        if (!m_iDifT.empty()) m_iDifT[k][j][i] = m_iDifT[k][j][i - 1];
        for (auto& dif : m_eDifM) dif[k][j][i] = dif[k][j][i - 1];
        for (auto& exc : m_excRates) exc[k][j][i] = exc[k][j][i - 1];
        for (auto& ion : m_ionRates) ion[k][j][i] = ion[k][j][i - 1];
       }
    }
  }
}
 
void MediumGas::InsertB(const int ib, const int ne, const int nb, 
                        const int na) {
  for (int k = 0; k < na; ++k) {
    if (!m_eVelE.empty()) m_eVelE[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eVelB.empty()) m_eVelB[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eVelX.empty()) m_eVelX[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eDifL.empty()) m_eDifL[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eDifT.empty()) m_eDifT[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eAlp.empty())  m_eAlp[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eAlp0.empty()) m_eAlp0[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eAtt.empty())  m_eAtt[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_eLor.empty())  m_eLor[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_iMob.empty())  m_iMob[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_iDis.empty())  m_iDis[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_iDifL.empty()) m_iDifL[k].resize(nb + 1, std::vector<double>(ne, 0.));
    if (!m_iDifT.empty()) m_iDifT[k].resize(nb + 1, std::vector<double>(ne, 0.));
    for (auto& dif : m_eDifM) {
      dif[k].resize(nb + 1, std::vector<double>(ne, 0.));
    }
    for (auto& exc : m_excRates) {
      exc[k].resize(nb + 1, std::vector<double>(ne, 0.));
    }
    for (auto& ion : m_ionRates) {
      ion[k].resize(nb + 1, std::vector<double>(ne, 0.));
    }
    for (int i = 0; i < ne; ++i) {
      for (int j = nb; j > ib; j--) {
        if (!m_eVelE.empty()) m_eVelE[k][j][i] = m_eVelE[k][j - 1][i];
        if (!m_eVelB.empty()) m_eVelB[k][j][i] = m_eVelB[k][j - 1][i];
        if (!m_eVelX.empty()) m_eVelX[k][j][i] = m_eVelX[k][j - 1][i];
        if (!m_eDifL.empty()) m_eDifL[k][j][i] = m_eDifL[k][j - 1][i];
        if (!m_eDifT.empty()) m_eDifT[k][j][i] = m_eDifT[k][j - 1][i];
        if (!m_eAlp.empty())  m_eAlp[k][j][i]  = m_eAlp[k][j - 1][i];
        if (!m_eAlp0.empty()) m_eAlp0[k][j][i] = m_eAlp0[k][j - 1][i];
        if (!m_eAtt.empty())  m_eAtt[k][j][i]  = m_eAtt[k][j - 1][i];
        if (!m_eLor.empty())  m_eLor[k][j][i]  = m_eLor[k][j - 1][i];
        if (!m_iMob.empty())  m_iMob[k][j][i]  = m_iMob[k][j - 1][i];
        if (!m_iDis.empty())  m_iDis[k][j][i]  = m_iDis[k][j - 1][i];
        if (!m_iDifL.empty()) m_iDifL[k][j][i] = m_iDifL[k][j - 1][i];
        if (!m_iDifT.empty()) m_iDifT[k][j][i] = m_iDifT[k][j - 1][i];
        for (auto& dif : m_eDifM) dif[k][j][i] = dif[k][j - 1][i];
        for (auto& exc : m_excRates) exc[k][j][i] = exc[k][j - 1][i];
        for (auto& ion : m_ionRates) ion[k][j][i] = ion[k][j - 1][i];
      }
    }
  } 
}
 
void MediumGas::InsertA(const int ia, const int ne, const int nb,
                        const int na) {
  ResizeA(m_eVelE, ne, nb, na + 1);
  ResizeA(m_eVelB, ne, nb, na + 1);
  ResizeA(m_eVelX, ne, nb, na + 1);
  ResizeA(m_eDifL, ne, nb, na + 1);
  ResizeA(m_eDifT, ne, nb, na + 1);
  ResizeA(m_eAlp, ne, nb, na + 1);
  ResizeA(m_eAlp0, ne, nb, na + 1);
  ResizeA(m_eAtt, ne, nb, na + 1);
  ResizeA(m_eLor, ne, nb, na + 1);
  ResizeA(m_iMob, ne, nb, na + 1);
  ResizeA(m_iDis, ne, nb, na + 1);
  ResizeA(m_iDifL, ne, nb, na + 1);
  ResizeA(m_iDifT, ne, nb, na + 1);
  for (auto& dif : m_eDifM) ResizeA(dif, ne, nb, na + 1);
  for (auto& exc : m_excRates) ResizeA(exc, ne, nb, na + 1);
  for (auto& ion : m_ionRates) ResizeA(ion, ne, nb, na + 1);
  for (int j = 0; j < nb; ++j) {
    for (int i = 0; i < ne; ++i) {
      for (int k = na; k > ia; k--) {
        if (!m_eVelE.empty()) m_eVelE[k][j][i] = m_eVelE[k - 1][j][i];
        if (!m_eVelB.empty()) m_eVelB[k][j][i] = m_eVelB[k - 1][j][i];
        if (!m_eVelX.empty()) m_eVelX[k][j][i] = m_eVelX[k - 1][j][i];
        if (!m_eDifL.empty()) m_eDifL[k][j][i] = m_eDifL[k - 1][j][i];
        if (!m_eDifT.empty()) m_eDifT[k][j][i] = m_eDifT[k - 1][j][i];
        if (!m_eAlp.empty()) m_eAlp[k][j][i] = m_eAlp[k - 1][j][i];
        if (!m_eAlp0.empty()) m_eAlp0[k][j][i] = m_eAlp0[k - 1][j][i];
        if (!m_eAtt.empty()) m_eAtt[k][j][i] = m_eAtt[k - 1][j][i];
        if (!m_eLor.empty()) m_eLor[k][j][i] = m_eLor[k - 1][j][i];
        if (!m_iMob.empty()) m_iMob[k][j][i] = m_iMob[k - 1][j][i];
        if (!m_iDis.empty()) m_iDis[k][j][i] = m_iDis[k - 1][j][i];
        if (!m_iDifL.empty()) m_iDifL[k][j][i] = m_iDifL[k - 1][j][i];
        if (!m_iDifT.empty()) m_iDifT[k][j][i] = m_iDifT[k - 1][j][i];
        for (auto& dif : m_eDifM) dif[k][j][i] = dif[k - 1][j][i];
        for (auto& exc : m_excRates) exc[k][j][i] = exc[k - 1][j][i];
        for (auto& ion : m_ionRates) ion[k][j][i] = ion[k - 1][j][i];
      }
    }
  }
}
 
void MediumGas::ZeroRowE(const int ie, const int nb, const int na) {
  for (int k = 0; k < na; ++k) {
    for (int j = 0; j < nb; ++j) {
      if (!m_eVelE.empty()) m_eVelE[k][j][ie] = 0.;
    }
  }
}
 
void MediumGas::ZeroRowB(const int ib, const int ne, const int na) {
  for (int k = 0; k < na; ++k) {
    for (int i = 0; i < ne; ++i) {
      if (!m_eVelE.empty()) m_eVelE[k][ib][i] = 0.;
    }
  }
}
 
void MediumGas::ZeroRowA(const int ia, const int ne, const int nb) {
  for (int j = 0; j < nb; ++j) {
    for (int i = 0; i < ne; ++i) {
      if (!m_eVelE.empty()) m_eVelE[ia][j][i] = 0.;
    }
  }
}
 
bool MediumGas::WriteGasFile(const std::string& filename) {
 
  // -----------------------------------------------------------------------
  //    GASWRT
  // -----------------------------------------------------------------------
 
  // Set the gas mixture.
  constexpr int nMagboltzGases = 60;
  std::vector<double> mixture(nMagboltzGases, 0.);
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    const int ng = GetGasNumberGasFile(m_gas[i]);
    if (ng <= 0) {
      std::cerr << m_className << "::WriteGasFile:\n"
                << "    Error retrieving gas number for " << m_gas[i] << ".\n";
      continue;
    }
    mixture[ng - 1] = m_fraction[i] * 100.;
  }
 
  if (m_debug) {
    std::cout << m_className << "::WriteGasFile:\n"
              << "    Writing gas tables to file " << filename << "\n";
  }
 
  std::ofstream outfile;
  outfile.open(filename.c_str(), std::ios::out);
  if (!outfile.is_open()) {
    std::cerr << m_className << "::WriteGasFile:\n"
              << "    Cannot open file " << filename << ".\n";
    outfile.close();
    return false;
  }
 
  // Assemble the GASOK bits.
  std::bitset<20> gasok;
  GetGasBits(gasok);
  std::string okstr(20, 'F');
  for (unsigned int i = 0; i < 20; ++i) {
    if (gasok[i]) okstr[i] = 'T';
  }
  if (m_debug) std::cout << "    GASOK bits: " << okstr << "\n";
  // Get the current time.
  time_t rawtime = time(0);
  tm timeinfo = *localtime(&rawtime);
  char datebuf[80] = {0};
  char timebuf[80] = {0};
  // Format date and time.
  strftime(datebuf, sizeof(datebuf) - 1, "%d/%m/%y", &timeinfo);
  strftime(timebuf, sizeof(timebuf) - 1, "%H.%M.%S", &timeinfo);
  // Set the member name.
  std::string member = "< none >";
  // Write the header.
  outfile << "*----.----1----.----2----.----3----.----4----.----"
          << "5----.----6----.----7----.----8----.----9----.---"
          << "10----.---11----.---12----.---13--\n";
  outfile << "% Created " << datebuf << " at " << timebuf << " ";
  outfile << member << " GAS      ";
  // Add remark.
  std::string buffer;
  outfile << "\"none" << std::string(25, ' ') << "\"\n";
  const int version = 12;
  outfile << " Version   : " << version << "\n";
  outfile << " GASOK bits: " << okstr << "\n";
  std::stringstream ids;
  ids.str("");
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    ids << m_gas[i] << " " << 100. * m_fraction[i] << "%, ";
  }
  ids << "T=" << m_temperatureTable << " K, "
      << "p=" << m_pressureTable / AtmosphericPressure << " atm";
  outfile << " Identifier: " << std::setw(80) << std::left << ids.str() << "\n";
  outfile << " Clusters  : " << std::string(80, ' ') << "\n";
  outfile << " Dimension : ";
  if (m_tab2d) {
    outfile << "T ";
  } else {
    outfile << "F ";
  }
 
  const unsigned int nE = m_eFields.size();
  const unsigned int nB = m_bFields.size();
  const unsigned int nA = m_bAngles.size();
  if (m_debug) {
    std::cout << m_className << "::WriteGasFile:\n    "
              << "Dataset has the following dimensions:\n    "
              << "3D = " << m_tab2d << " nE = " << nE << ", nB = " << nB 
              << ", nA = " << nA << ", nExc = "
              << m_excLevels.size() << ", nIon = " << m_ionLevels.size() << "\n";
  } 
  outfile << FmtInt(nE, 9) << " " << FmtInt(nA, 9) << " "
          << FmtInt(nB, 9) << " " << FmtInt(m_excLevels.size(), 9) << " "
          << FmtInt(m_ionLevels.size(), 9) << "\n";
  // Store reduced electric fields (E/p).
  outfile << " E fields   \n";
  std::vector<double> efields = m_eFields;
  for (auto& field : efields) field /= m_pressureTable;
  int cnt = 0;
  // List 5 values, then new line.
  PrintArray(efields, outfile, cnt, 5);
  if (nE % 5 != 0) outfile << "\n";
  // Store angles.
  outfile << " E-B angles \n";
  cnt = 0;
  PrintArray(m_bAngles, outfile, cnt, 5);
  if (nA % 5 != 0) outfile << "\n";
  // Store B fields (convert to hGauss).
  outfile << " B fields   \n";
  std::vector<double> bfields = m_bFields;
  for (auto& field : bfields) field *= 100.;
  cnt = 0;
  PrintArray(bfields, outfile, cnt, 5);
  if (nB % 5 != 0) outfile << "\n";
 
  // Store the gas composition.
  outfile << " Mixture:   \n";
  cnt = 0;
  PrintArray(mixture, outfile, cnt, 5);
  if (nMagboltzGases % 5 != 0) outfile << "\n";
 
  cnt = 0;
  for (const auto& exc : m_excLevels) {
    ++cnt;
    outfile << " Excitation " << FmtInt(cnt, 5) << ": " << std::setw(45);
    // If the label contains white space, enclose it in quotes.
    if (exc.label.find(" ") != std::string::npos) {
      outfile << "\"" + exc.label + "\"";
    } else {
      outfile << exc.label;
    }
    outfile << "  " << FmtFloat(exc.energy) << FmtFloat(exc.prob) 
            << FmtFloat(exc.rms) << FmtFloat(exc.dt) << "\n";
  }
  cnt = 0;
  for (const auto& ion : m_ionLevels) {
    ++cnt;
    outfile << " Ionisation " << FmtInt(cnt, 5) << ": " << std::setw(45);
    // If the label contains white space, enclose it in quotes.
    if (ion.label.find(" ") != std::string::npos) {
      outfile << "\"" + ion.label << "\"";
    } else {
      outfile << ion.label;
    }
    outfile << "  " << FmtFloat(ion.energy) << "\n";
  }
 
  const double sqrp = sqrt(m_pressureTable);
  const double logp = log(m_pressureTable);
  outfile << " The gas tables follow:\n";
  cnt = 0;
  for (unsigned int i = 0; i < nE; ++i) {
    for (unsigned int j = 0; j < nA; ++j) {
      for (unsigned int k = 0; k < nB; ++k) {
        // Get the velocities.
        double ve = m_eVelE.empty() ? 0. : m_eVelE[j][k][i];
        double vb = m_eVelB.empty() ? 0. : m_eVelB[j][k][i];
        double vx = m_eVelX.empty() ? 0. : m_eVelX[j][k][i];
        // Convert from cm / ns to cm / us.
        ve *= 1.e3;
        vb *= 1.e3;
        vx *= 1.e3;
        // Make a list of the values to be written, start with the velocities.
        std::vector<double> val;
        if (m_tab2d) {
          val = {ve, vb, vx};
        } else {
          // Add dummy spline values in case of a 1D table.
          val = {ve, 0., vb, 0., vx, 0.};
        }
        // Get the diffusion coefficients.
        double dl = m_eDifL.empty() ? 0. : m_eDifL[j][k][i] * sqrp;
        double dt = m_eDifT.empty() ? 0. : m_eDifT[j][k][i] * sqrp;
        // Get the Townsend and attachment coefficients.
        double alpha = m_eAlp.empty() ? -30. : m_eAlp[j][k][i] - logp;
        double alpha0 = m_eAlp0.empty() ? -30. : m_eAlp0[j][k][i] - logp;
        double eta = m_eAtt.empty() ? -30. : m_eAtt[j][k][i] - logp;
        // Add them to the list.
        if (m_tab2d) {
          val.insert(val.end(), {dl, dt, alpha, alpha0, eta});
        } else {
          val.insert(val.end(), {dl, 0., dt, 0., alpha, 0., alpha0, eta, 0.});
        }
        // Get the ion mobility and convert from cm2 / (V ns) to cm2 / (V us).
        double mu = m_iMob.empty() ? 0. : 1.e3 * m_iMob[j][k][i];
        // Get the Lorentz angle.
        double lor = m_eLor.empty() ? 0 : m_eLor[j][k][i];
        // Get the dissociation coefficient.
        double diss = m_iDis.empty() ? -30. : m_iDis[j][k][i] - logp;
        // Add them to the list.
        if (m_tab2d) {
          val.insert(val.end(), {mu, lor, diss});
        } else {
          val.insert(val.end(), {mu, 0., lor, 0., diss, 0.});
        }
        // Get the components of the diffusion tensor.
        for (int l = 0; l < 6; ++l) {
          if (!m_eDifM.empty()) {
            const double cov = m_eDifM[l][j][k][i] * m_pressureTable;
            val.push_back(cov);
          } else {
            val.push_back(0.);
          }
          if (!m_tab2d) val.push_back(0.);
        }
        // Get the excitation and ionisation rates.
        for (const auto& rexc : m_excRates) {
          if (rexc[j][k][i] > Small) { 
            val.push_back(rexc[j][k][i]);
          } else {
            val.push_back(0.);
          }
          if (!m_tab2d) val.push_back(0.);
        }
        for (const auto& rion : m_ionRates) {
          if (rion[j][k][i] > Small) {
            val.push_back(rion[j][k][i]);
          } else {
            val.push_back(0.);
          }
          if (!m_tab2d) val.push_back(0.);
        }
        PrintArray(val, outfile, cnt, 8);
      }
      if (cnt % 8 != 0) outfile << "\n";
      cnt = 0;
    }
  }
 
  if (!m_tab2d) {
    // Extrapolation methods
    int extrapH[13], extrapL[13];
    extrapL[0] = extrapL[1] = extrapL[2] = m_extrVel.first;
    extrapH[0] = extrapH[1] = extrapH[2] = m_extrVel.second;
    extrapL[3] = extrapL[8] = extrapL[10] = m_extrDif.first;
    extrapH[3] = extrapH[8] = extrapH[10] = m_extrDif.second;
    extrapL[4] = m_extrAlp.first;
    extrapH[4] = m_extrAlp.second;
    extrapL[5] = m_extrAtt.first;
    extrapH[5] = m_extrAtt.second;
    extrapL[6] = m_extrMob.first;
    extrapH[6] = m_extrMob.second;
    // Lorentz angle
    extrapL[7] = m_extrLor.first;
    extrapH[7] = m_extrLor.second;
    extrapL[9] = m_extrDis.first;
    extrapH[9] = m_extrDis.second;
    extrapL[11] = m_extrExc.first;
    extrapH[11] = m_extrExc.second;
    extrapL[12] = m_extrIon.first;
    extrapH[12] = m_extrIon.second;
    outfile << " H Extr: ";
    for (int i = 0; i < 13; i++) outfile << FmtInt(extrapH[i], 5);
    outfile << "\n";
    outfile << " L Extr: ";
    for (int i = 0; i < 13; i++) outfile << FmtInt(extrapL[i], 5);
    outfile << "\n";
  }
  // Increment the threshold indices for compatibility with Fortran.
  outfile << " Thresholds: " << FmtInt(m_eThrAlp + 1, 10)
          << FmtInt(m_eThrAtt + 1, 10) << FmtInt(m_iThrDis + 1, 10) << "\n";
  // Interpolation methods.
  int interp[13];
  interp[0] = interp[1] = interp[2] = m_intpVel;
  interp[3] = interp[8] = interp[10] = m_intpDif;
  interp[4] = m_intpAlp;
  interp[5] = m_intpAtt;
  interp[6] = m_intpMob;
  interp[7] = m_intpLor;
  interp[9] = m_intpDis;
  interp[11] = m_intpExc;
  interp[12] = m_intpIon;
  outfile << " Interp: ";
  for (int i = 0; i < 13; i++) outfile << FmtInt(interp[i], 5);
  outfile << "\n";
  outfile << " A     =" << FmtFloat(0.) << ", Z     =" << FmtFloat(0.) << ","
          << " EMPROB=" << FmtFloat(0.) << ", EPAIR =" << FmtFloat(0.) << "\n";
  const double dli = m_iDifL.empty() ? 0. : m_iDifL[0][0][0];
  const double dti = m_iDifT.empty() ? 0. : m_iDifT[0][0][0];
  outfile << " Ion diffusion: " << FmtFloat(dli) << FmtFloat(dti) << "\n";
  outfile << " CMEAN =" << FmtFloat(0.) << ", RHO   =" << FmtFloat(0.) << ","
          << " PGAS  =" << FmtFloat(m_pressureTable) << ","
          << " TGAS  =" << FmtFloat(m_temperatureTable) << "\n";
  outfile << " CLSTYP    : NOT SET   \n"
          << " FCNCLS    : " << std::string(80, ' ') << "\n"
          << " NCLS      : " << FmtInt(0, 10) << "\n"
          << " Average   : " << FmtFloat(0., 25, 18) << "\n"
          << "  Heed initialisation done: F\n"
          << "  SRIM initialisation done: F\n";
  outfile.close();
 
  return true;
}
 
void MediumGas::GetGasBits(std::bitset<20>& gasok) const {
 
  gasok.reset();
  if (!m_eVelE.empty()) gasok.set(0);
  if (!m_iMob.empty())  gasok.set(1);
  if (!m_eDifL.empty()) gasok.set(2);
  if (!m_eAlp.empty())  gasok.set(3);
  // Cluster size distribution; skipped
  if (!m_eAtt.empty())  gasok.set(5);
  if (!m_eLor.empty())  gasok.set(6);
  if (!m_eDifT.empty()) gasok.set(7);
  if (!m_eVelB.empty()) gasok.set(8);
  if (!m_eVelX.empty()) gasok.set(9);
  if (!m_eDifM.empty()) gasok.set(10);
  if (!m_iDis.empty())  gasok.set(11);
  // SRIM, HEED; skipped
  if (!m_excRates.empty()) gasok.set(14);
  if (!m_ionRates.empty()) gasok.set(15);
}
 
void MediumGas::PrintGas() {
  // Print a summary.
  std::cout << m_className << "::PrintGas:\n"
            << "    Gas composition: " << m_name;
  if (m_nComponents > 1) {
    std::cout << " (" << m_fraction[0] * 100;
    for (unsigned int i = 1; i < m_nComponents; ++i) {
      std::cout << "/" << m_fraction[i] * 100;
    }
    std::cout << ")";
  }
  std::cout << "\n";
  std::cout << "    Pressure:    " << m_pressure << " Torr\n"
            << "    Temperature: " << m_temperature << " K\n"
            << "    Gas file:\n"
            << "      Pressure:    " << m_pressureTable << " Torr\n"
            << "      Temperature: " << m_temperatureTable << " K\n";
  if (m_eFields.size() > 1) {
    std::cout << "    Electric field range:  " << m_eFields[0] << " - "
              << m_eFields.back() << " V/cm in " << m_eFields.size() - 1
              << " steps.\n";
  } else if (m_eFields.size() == 1) {
    std::cout << "    Electric field:        " << m_eFields[0] << " V/cm\n";
  } else {
    std::cout << "    Electric field range: not set\n";
  }
  if (m_bFields.size() > 1) {
    std::cout << "    Magnetic field range:  " << m_bFields[0] << " - "
              << m_bFields.back() << " T in " << m_bFields.size() - 1
              << " steps.\n";
  } else if (m_bFields.size() == 1) {
    std::cout << "    Magnetic field:        " << m_bFields[0] << " T\n";
  } else {
    std::cout << "    Magnetic field range: not set\n";
  }
  if (m_bAngles.size() > 1) {
    std::cout << "    Angular range:         " << m_bAngles[0] << " - "
              << m_bAngles.back() << " rad in " << m_bAngles.size() - 1
              << " steps.\n";
  } else if (m_bAngles.size() == 1) {
    std::cout << "    Angle between E and B: " << m_bAngles[0] << " rad\n";
  } else {
    std::cout << "    Angular range: not set\n";
  }
 
  std::cout << "    Available electron transport data:\n";
  if (!m_eVelE.empty()) {
    std::cout << "      Velocity along E\n";
  }
  if (!m_eVelB.empty()) {
    std::cout << "      Velocity along Bt\n";
  }
  if (!m_eVelX.empty()) {
    std::cout << "      Velocity along ExB\n";
  }
  if (!(m_eVelE.empty() && m_eVelB.empty() && 
        m_eVelX.empty())) {
    PrintExtrapolation(m_extrVel);
    std::cout << "        Interpolation order: " << m_intpVel << "\n";
  }
  if (!m_eDifL.empty()) {
    std::cout << "      Longitudinal diffusion coefficient\n";
  }
  if (!m_eDifT.empty()) {
    std::cout << "      Transverse diffusion coefficient\n";
  }
  if (!m_eDifM.empty()) {
    std::cout << "      Diffusion tensor\n";
  }
  if (!m_eDifL.empty() || !m_eDifT.empty() || !m_eDifM.empty()) {
    PrintExtrapolation(m_extrDif);
    std::cout << "        Interpolation order: " << m_intpDif << "\n";
  }
  if (!m_eAlp.empty()) {
    std::cout << "      Townsend coefficient\n";
    PrintExtrapolation(m_extrAlp);
    std::cout << "        Interpolation order: " << m_intpAlp << "\n";
  }
  if (!m_eAtt.empty()) {
    std::cout << "      Attachment coefficient\n";
    PrintExtrapolation(m_extrAtt);
    std::cout << "        Interpolation order: " << m_intpAtt << "\n";
  }
  if (!m_eLor.empty()) {
    std::cout << "      Lorentz Angle\n";
    PrintExtrapolation(m_extrLor);
    std::cout << "        Interpolation order: " << m_intpLor << "\n";
  }
  if (!m_excRates.empty()) {
    std::cout << "      Excitation rates\n";
    for (const auto& exc : m_excLevels) {
      std::cout << "        " << exc.label << "\n";
      std::cout << "          Energy = " << exc.energy << " eV";
      if (exc.prob > 0.) {
        std::cout << ", Penning transfer probability = " << exc.prob;
      } 
      std::cout << "\n";
    }
    PrintExtrapolation(m_extrExc);
    std::cout << "        Interpolation order: " << m_intpExc << "\n";
  }
  if (!m_ionRates.empty()) {
    std::cout << "      Ionisation rates\n";
    for (const auto& ion : m_ionLevels) {
      std::cout << "        " << ion.label << "\n";
      std::cout << "          Threshold = " << ion.energy << " eV\n";
    }
    PrintExtrapolation(m_extrIon);
    std::cout << "        Interpolation order: " << m_intpIon << "\n";
  }
  if (m_eVelE.empty() && m_eVelB.empty() && m_eVelX.empty() &&
      m_eDifL.empty() && m_eDifT.empty() && m_eDifM.empty() &&
      m_eAlp.empty() && m_eAtt.empty() && m_excRates.empty() &&
      m_ionRates.empty() && m_eLor.empty()) {
    std::cout << "      none\n";
  }
 
  std::cout << "    Available ion transport data:\n";
  if (!m_iMob.empty()) {
    std::cout << "      Mobility\n";
    PrintExtrapolation(m_extrMob);
    std::cout << "        Interpolation order: " << m_intpMob << "\n";
  }
  if (!m_iDifL.empty()) {
    std::cout << "      Longitudinal diffusion coefficient\n";
  }
  if (!m_iDifT.empty()) {
    std::cout << "      Transverse diffusion coefficient\n";
  }
  if (!m_iDifL.empty() || !m_iDifT.empty()) {
    PrintExtrapolation(m_extrDif);
    std::cout << "        Interpolation order: " << m_intpDif << "\n";
  }
  if (!m_iDis.empty()) {
    std::cout << "      Dissociation coefficient\n";
    PrintExtrapolation(m_extrDis);
    std::cout << "        Interpolation order: " << m_intpDis << "\n";
  }
  if (m_iMob.empty() && m_iDifL.empty() && m_iDifT.empty() && m_iDis.empty()) {
    std::cout << "      none\n";
  }
}
 
bool MediumGas::LoadIonMobility(const std::string& filename) {
  // Open the file.
  std::ifstream infile;
  infile.open(filename.c_str(), std::ios::in);
  // Make sure the file could actually be opened.
  if (!infile) {
    std::cerr << m_className << "::LoadIonMobility:\n"
              << "    Error opening file " << filename << ".\n";
    ;
    return false;
  }
 
  double field = -1., mu = -1.;
  double lastField = field;
  std::vector<double> efields;
  std::vector<double> mobilities;
 
  // Read the file line by line.
  int i = 0;
  while (!infile.eof()) {
    ++i;
    // Read the next line.
    char line[100];
    infile.getline(line, 100);
    char* token = strtok(line, " ,\t");
    if (!token) {
      break;
    } else if (strcmp(token, "#") == 0 || strcmp(token, "*") == 0 ||
               strcmp(token, "//") == 0) {
      continue;
    } else {
      field = atof(token);
      token = strtok(NULL, " ,\t");
      if (!token) {
        std::cerr << m_className << "::LoadIonMobility:\n"
                  << "    Found E/N but no mobility before the end-of-line.\n"
                  << "    Skipping line " << i << ".\n";
        continue;
      }
      mu = atof(token);
    }
    token = strtok(NULL, " ,\t");
    if (token && strcmp(token, "//") != 0) {
      std::cerr << m_className << "::LoadIonMobility:\n"
                << "    Unexpected non-comment characters after the mobility.\n"
                << "    Skipping line " << i << ".\n";
      continue;
    }
    if (m_debug) {
      std::cout << "    E/N = " << field << " Td: mu = " << mu << " cm2/(Vs)\n";
    }
    // Check if the data has been read correctly.
    if (infile.fail() && !infile.eof()) {
      std::cerr << m_className << "::LoadIonMobility:\n";
      std::cerr << "    Error reading file\n";
      std::cerr << "    " << filename << " (line " << i << ").\n";
      return false;
    }
    // Make sure the values make sense.
    // Negative field values are not allowed.
    if (field < 0.) {
      std::cerr << m_className << "::LoadIonMobility:\n";
      std::cerr << "    Negative electric field (line " << i << ").\n";
      return false;
    }
    // The table has to be in ascending order.
    if (field <= lastField) {
      std::cerr << m_className << "::LoadIonMobility:\n";
      std::cerr << "    Table is not in ascending order (line " << i << ").\n";
      return false;
    }
    // Add the values to the list.
    efields.push_back(field);
    mobilities.push_back(mu);
    lastField = field;
  }
 
  const int ne = efields.size();
  if (ne <= 0) {
    std::cerr << m_className << "::LoadIonMobilities:\n";
    std::cerr << "    No valid data found.\n";
    return false;
  }
 
  // The E/N values in the file are supposed to be in Td (10^-17 V cm2).
  const double scaleField = 1.e-17 * GetNumberDensity();
  // The reduced mobilities in the file are supposed to be in cm2/(V s).
  const double scaleMobility = 1.e-9 * (AtmosphericPressure / m_pressure) *
                               (m_temperature / ZeroCelsius);
  for (int j = ne; j--;) {
    // Scale the fields and mobilities.
    efields[j] *= scaleField;
    mobilities[j] *= scaleMobility;
  }
 
  std::cout << m_className << "::LoadIonMobility:\n";
  std::cout << "    Read " << ne << " values from file " << filename << "\n";
 
  return SetIonMobility(efields, mobilities);
}
 
void MediumGas::ResetTables() {
 
  Medium::ResetTables();
  m_eAlp0.clear();
  m_excLevels.clear();
  m_ionLevels.clear();
  m_excRates.clear();
  m_ionRates.clear();
}
 
bool MediumGas::EnablePenningTransfer(const double r,
                                      const double lambda) {
 
  if (r < 0. || r > 1.) {
    std::cerr << m_className << "::EnablePenningTransfer:\n"
              << "    Transfer probability must be in the range [0, 1].\n";
    return false;
  }
 
  m_rPenningGlobal = r;
  m_lambdaPenningGlobal = lambda > Small ? lambda : 0.;
 
  std::cout << m_className << "::EnablePenningTransfer:\n"
            << "    Global Penning transfer parameters set to:\n"
            << "    r      = " << m_rPenningGlobal << "\n"
            << "    lambda = " << m_lambdaPenningGlobal << " cm\n";
 
  // Find the min. ionisation energy.
  if (m_ionLevels.empty()) {
    std::cerr << m_className << "::EnablePenningTransfer:\n    Warning: present"
              << " gas table has no ionisation rates.\n    Ignore this message "
              << "if you are using microscopic tracking only.\n";
    return true;
  }
  double minIonPot = -1.;
  for (const auto& ion : m_ionLevels) {
    if (minIonPot < 0.) {
      minIonPot = ion.energy;
    } else {
      minIonPot = std::min(minIonPot, ion.energy);
    }
  }
 
  // Update the transfer probabilities of the excitation levels in the table.
  unsigned int nLevelsFound = 0;
  for (auto& exc : m_excLevels) {
    if (exc.energy < minIonPot) continue;
    exc.prob = m_rPenningGlobal;
    exc.rms = m_lambdaPenningGlobal;
    ++nLevelsFound; 
  }
  if (nLevelsFound > 0) {
    std::cout << m_className << "::EnablePenningTransfer:\n"
              << "    Updated transfer probabilities for " << nLevelsFound 
              << " excitation rates.\n";
    AdjustTownsendCoefficient();
  } else {
    std::cerr << m_className << "::EnablePenningTransfer:\n    Warning: present"
              << " gas table has no eligible excitation rates.\n    Ignore this"
              << " message if you are using microscopic tracking only.\n";
  }
  return true;
}
 
bool MediumGas::EnablePenningTransfer(const double r, const double lambda,
                                      std::string gasname) {
 
  if (r < 0. || r > 1.) {
    std::cerr << m_className << "::EnablePenningTransfer:\n"
              << "    Transfer probability must be in the range [0, 1].\n";
    return false;
  }
 
  // Get the "standard" name of this gas.
  gasname = GetGasName(gasname);
  if (gasname.empty()) {
    std::cerr << m_className << "::EnablePenningTransfer: Unknown gas name.\n";
    return false;
  }
 
  // Look for this gas in the present gas mixture.
  int iGas = -1;
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    if (m_gas[i] == gasname) {
      m_rPenningGas[i] = r;
      m_lambdaPenningGas[i] = lambda > Small ? lambda : 0.;
      iGas = i;
      break;
    }
  }
 
  if (iGas < 0) {
    std::cerr << m_className << "::EnablePenningTransfer:\n"
              << "    Requested gas (" << gasname
              << ") is not part of the present gas mixture.\n";
    return false;
  }
 
  // Find the min. ionisation energy.
  if (m_ionLevels.empty()) {
    std::cerr << m_className << "::EnablePenningTransfer:\n    Warning: present"
              << " gas table has no ionisation rates.\n    Ignore this message"
              << " if you are using microscopic tracking only.\n";
    return true;
  }
  double minIonPot = -1.;
  for (const auto& ion : m_ionLevels) {
    if (minIonPot < 0.) {
      minIonPot = ion.energy;
    } else {
      minIonPot = std::min(minIonPot, ion.energy);
    }
  }
  // Update the transfer probabilities of the excitation levels in the table.
  unsigned int nLevelsFound = 0;
  for (auto& exc : m_excLevels) {
    if (exc.energy < minIonPot) continue;
    // Try to extract the gas name from the label. 
    // TODO: test if this works for all gases and excitation levels.
    const auto pos = exc.label.find('-');
    if (pos == std::string::npos) continue;
    if (GetGasName(exc.label.substr(0, pos)) != gasname) continue;
    exc.prob = r;
    exc.rms = lambda;
    ++nLevelsFound; 
  }
  if (nLevelsFound > 0) {
    std::cout << m_className << "::EnablePenningTransfer:\n"
              << "    Updated transfer probabilities for " << nLevelsFound 
              << " excitation rates.\n";
    AdjustTownsendCoefficient();
  } else {
    std::cerr << m_className << "::EnablePenningTransfer:\n    Warning: present"
              << " gas table has no eligible excitation rates.\n    Ignore this"
              << " message if you are using microscopic tracking only.\n";
  }
  return true;
}
 
void MediumGas::DisablePenningTransfer() {
 
  m_rPenningGlobal = 0.;
  m_lambdaPenningGlobal = 0.;
 
  m_rPenningGas.fill(0.);
  m_lambdaPenningGas.fill(0.);
 
  if (m_excLevels.empty()) return;
  for (auto& exc : m_excLevels) {
    exc.prob = 0.; 
  }
  AdjustTownsendCoefficient();
}
 
bool MediumGas::DisablePenningTransfer(std::string gasname) {
 
  // Get the "standard" name of this gas.
  gasname = GetGasName(gasname);
  if (gasname.empty()) {
    std::cerr << m_className << "::DisablePenningTransfer: Unknown gas name.\n";
    return false;
  }
 
  // Look for this gas in the present gas mixture.
  int iGas = -1;
  for (unsigned int i = 0; i < m_nComponents; ++i) {
    if (m_gas[i] == gasname) {
      m_rPenningGas[i] = 0.;
      m_lambdaPenningGas[i] = 0.;
      iGas = i;
      break;
    }
  }
 
  if (iGas < 0) {
    std::cerr << m_className << "::DisablePenningTransfer:\n"
              << "    Requested gas (" << gasname
              << ") is not part of the present gas mixture.\n";
    return false;
  }
 
  if (m_excLevels.empty()) return true;
  for (auto& exc : m_excLevels) {
    // Try to extract the gas name from the label. 
    const auto pos = exc.label.find('-');
    if (pos == std::string::npos) continue;
    if (GetGasName(exc.label.substr(0, pos)) != gasname) continue;
    exc.prob = 0.; 
  }
  AdjustTownsendCoefficient();
  return true;
}
 
 
bool MediumGas::AdjustTownsendCoefficient() {
 
  // -----------------------------------------------------------------------
  //    GASSPT
  // -----------------------------------------------------------------------
 
  // Make sure there are Townsend coefficients.
  if (m_eAlp.empty() || m_eAlp0.empty()) {
    std::cerr << m_className << "::AdjustTownsendCoefficient:\n    "
              << "Present gas table does not include Townsend coefficients.\n";
    return false;
  }
  // Make sure there are excitation and ionisation rates.
  if (m_excLevels.empty() || m_excRates.empty()) {
    std::cerr << m_className << "::AdjustTownsendCoefficient:\n    "
              << "Present gas table does not include excitation rates.\n";
    return false;
  }
  if (m_ionLevels.empty() || m_ionRates.empty()) {
    std::cerr << m_className << "::AdjustTownsendCoefficient:\n    "
              << "Present gas table does not include ionisation rates.\n";
    return false;
  }
  const unsigned int nE = m_eFields.size();
  const unsigned int nB = m_bFields.size();
  const unsigned int nA = m_bAngles.size();
  if (m_debug) {
    std::cout << m_className << "::AdjustTownsendCoefficient:\n"
              << "   Entry         Exc.      Ion.\n";
  } 
  for (unsigned int i = 0; i < nE; ++i) {
    for (unsigned int j = 0; j < nA; ++j) {
      for (unsigned int k = 0; k < nB; ++k) {
        // Compute total ionisation rate.
        double rion = 0.;
        for (const auto& ion : m_ionRates) {
          rion += ion[j][k][i];
        }
        // Compute rate of Penning ionisations.
        double rexc = 0.;
        const unsigned int nexc = m_excLevels.size();
        for (unsigned int ie = 0; ie < nexc; ++ie) {
          rexc += m_excLevels[ie].prob * m_excRates[ie][j][k][i]; 
        }
        if (m_debug) {
          std::cout << FmtInt(i, 4) << FmtInt(j, 4) << FmtInt(k, 4) 
                    << FmtFloat(rexc, 12, 5) << FmtFloat(rion, 12, 5) << "\n"; 
        }
        // Adjust the Townsend coefficient.
        double alpha0 = m_eAlp0[j][k][i];
        if (alpha0 < -20.) {
          alpha0 = 0.;
        } else {
          alpha0 = m_pressure * exp(alpha0);
        }
        double alpha1 = alpha0;
        if (rion > 0.) alpha1 *= (rexc + rion) / rion;
        m_eAlp[j][k][i] = alpha1 > 0. ? log(alpha1 / m_pressure) : -30.;
      }
    }
  }
  // Update the threshold index.
  SetThreshold(m_eAlp);
  return true;
}
 
bool MediumGas::GetGasInfo(const std::string& gasname, double& a,
                           double& z) const {
  if (gasname == "CF4") {
    a = 12.0107 + 4 * 18.9984032;
    z = 6 + 4 * 9;
    return true;
  } else if (gasname == "Ar") {
    a = 39.948;
    z = 18;
  } else if (gasname == "He") {
    a = 4.002602;
    z = 2;
  } else if (gasname == "He-3") {
    a = 3.01602931914;
    z = 2;
  } else if (gasname == "Ne") {
    a = 20.1797;
    z = 10;
  } else if (gasname == "Kr") {
    a = 37.798;
    z = 36;
  } else if (gasname == "Xe") {
    a = 131.293;
    z = 54;
  } else if (gasname == "CH4") {
    a = 12.0107 + 4 * 1.00794;
    z = 6 + 4;
  } else if (gasname == "C2H6") {
    a = 2 * 12.0107 + 6 * 1.00794;
    z = 2 * 6 + 6;
  } else if (gasname == "C3H8") {
    a = 3 * 12.0107 + 8 * 1.00794;
    z = 3 * 6 + 8;
  } else if (gasname == "iC4H10") {
    a = 4 * 12.0107 + 10 * 1.00794;
    z = 4 * 6 + 10;
  } else if (gasname == "CO2") {
    a = 12.0107 + 2 * 15.9994;
    z = 6 + 2 * 8;
  } else if (gasname == "neoC5H12") {
    a = 5 * 12.0107 + 12 * 1.00794;
    z = 5 * 6 + 12;
  } else if (gasname == "H2O") {
    a = 2 * 1.00794 + 15.9994;
    z = 2 + 8;
  } else if (gasname == "O2") {
    a = 2 * 15.9994;
    z = 2 * 8;
  } else if (gasname == "N2") {
    a = 2 * 14.0067;
    z = 2 * 7;
  } else if (gasname == "NO") {
    a = 14.0067 + 15.9994;
    z = 7 + 8;
  } else if (gasname == "N2O") {
    a = 2 * 14.0067 + 15.9994;
    z = 2 * 7 + 8;
  } else if (gasname == "C2H4") {
    a = 2 * 12.0107 + 4 * 1.00794;
    z = 2 * 6 + 4;
  } else if (gasname == "C2H2") {
    a = 2 * 12.0107 + 2 * 1.00794;
    z = 2 * 6 + 2;
  } else if (gasname == "H2" || gasname == "paraH2") {
    a = 2 * 1.00794;
    z = 2;
  } else if (gasname == "D2" || gasname == "orthoD2") {
    a = 2 * 2.01410177785;
    z = 2;
  } else if (gasname == "CO") {
    a = 12.0107 + 15.9994;
    z = 6 + 8;
  } else if (gasname == "Methylal") {
    a = 3 * 12.0107 + 8 * 1.00794 + 2 * 15.9994;
    z = 3 * 6 + 8 + 2 * 8;
  } else if (gasname == "DME") {
    a = 4 * 12.0107 + 10 * 1.00794 + 2 * 15.9994;
    z = 4 * 6 + 10 + 2 * 8;
  } else if (gasname == "Reid-Step" || gasname == "Mawell-Model" ||
             gasname == "Reid-Ramp") {
    a = 1.;
    z = 1.;
  } else if (gasname == "C2F6") {
    a = 2 * 12.0107 + 6 * 18.9984032;
    z = 2 * 6 + 6 * 9;
  } else if (gasname == "SF6") {
    a = 32.065 + 6 * 18.9984032;
    z = 16 + 6 * 9;
  } else if (gasname == "NH3") {
    a = 14.0067 + 3 * 1.00794;
    z = 7 + 3;
  } else if (gasname == "C3H6") {
    a = 3 * 12.0107 + 6 * 1.00794;
    z = 3 * 6 + 6;
  } else if (gasname == "cC3H6") {
    a = 3 * 12.0107 + 6 * 1.00794;
    z = 3 * 6 + 6;
  } else if (gasname == "CH3OH") {
    a = 12.0107 + 4 * 1.00794 + 15.9994;
    z = 6 + 4 + 8;
  } else if (gasname == "C2H5OH") {
    a = 2 * 12.0107 + 6 * 1.00794 + 15.9994;
    z = 2 * 6 + 6 + 8;
  } else if (gasname == "C3H7OH" || gasname == "nC3H7OH") {
    a = 3 * 12.0107 + 8 * 1.00794 + 15.9994;
    z = 3 * 6 + 8 * 8;
  } else if (gasname == "Cs") {
    a = 132.9054519;
    z = 55;
  } else if (gasname == "F2") {
    a = 2 * 18.9984032;
    z = 2 * 9;
  } else if (gasname == "CS2") {
    a = 12.0107 + 2 * 32.065;
    z = 6 + 2 * 16;
  } else if (gasname == "COS") {
    a = 12.0107 + 15.9994 + 32.065;
    z = 6 + 8 + 16;
  } else if (gasname == "CD4") {
    a = 12.0107 + 4 * 2.01410177785;
    z = 6 + 4;
  } else if (gasname == "BF3") {
    a = 10.811 + 3 * 18.9984032;
    z = 5 + 3 * 9;
  } else if (gasname == "C2H2F4") {
    a = 2 * 12.0107 + 2 * 1.00794 + 4 * 18.9984032;
    z = 2 * 6 + 2 + 4 * 9;
  } else if (gasname == "CHF3") {
    a = 12.0107 + 1.00794 + 3 * 18.9984032;
    z = 6 + 1 + 3 * 9;
  } else if (gasname == "CF3Br") {
    a = 12.0107 + 3 * 18.9984032 + 79.904;
    z = 6 + 3 * 9 + 35;
  } else if (gasname == "C3F8") {
    a = 3 * 12.0107 + 8 * 18.9984032;
    z = 3 * 6 + 8 * 9;
  } else if (gasname == "O3") {
    a = 3 * 15.9994;
    z = 3 * 8;
  } else if (gasname == "Hg") {
    a = 2 * 200.59;
    z = 80;
  } else if (gasname == "H2S") {
    a = 2 * 1.00794 + 32.065;
    z = 2 + 16;
  } else if (gasname == "nC4H10") {
    a = 4 * 12.0107 + 10 * 1.00794;
    z = 4 * 6 + 10;
  } else if (gasname == "nC5H12") {
    a = 5 * 12.0107 + 12 * 1.00794;
    z = 5 * 6 + 12;
  } else if (gasname == "N2") {
    a = 2 * 14.0067;
    z = 2 * 7;
  } else if (gasname == "GeH4") {
    a = 72.64 + 4 * 1.00794;
    z = 32 + 4;
  } else if (gasname == "SiH4") {
    a = 28.0855 + 4 * 1.00794;
    z = 14 + 4;
  } else {
    a = 0.;
    z = 0.;
    return false;
  }
 
  return true;
}
 
std::string MediumGas::GetGasName(const int gasnumber, const int version) const {
 
  switch (gasnumber) {
    case 1:
      return "CF4";
      break;
    case 2:
      return "Ar";
      break;
    case 3:
      return "He";
      break;
    case 4:
      return "He-3";
      break;
    case 5:
      return "Ne";
      break;
    case 6:
      return "Kr";
      break;
    case 7:
      return "Xe";
      break;
    case 8:
      return "CH4";
      break;
    case 9:
      return "C2H6";
      break;
    case 10:
      return "C3H8";
      break;
    case 11:
      return "iC4H10";
      break;
    case 12:
      return "CO2";
      break;
    case 13:
      return "neoC5H12";
      break;
    case 14:
      return "H2O";
      break;
    case 15:
      return "O2";
      break;
    case 16:
      return "N2";
      break;
    case 17:
      return "NO";
      break;
    case 18:
      return "N2O";
      break;
    case 19:
      return "C2H4";
      break;
    case 20:
      return "C2H2";
      break;
    case 21:
      return "H2";
      break;
    case 22:
      return "D2";
      break;
    case 23:
      return "CO";
      break;
    case 24:
      return "Methylal";
      break;
    case 25:
      return "DME";
      break;
    case 26:
      return "Reid-Step";
      break;
    case 27:
      return "Maxwell-Model";
      break;
    case 28:
      return "Reid-Ramp";
      break;
    case 29:
      return "C2F6";
      break;
    case 30:
      return "SF6";
      break;
    case 31:
      return "NH3";
      break;
    case 32:
      return "C3H6";
      break;
    case 33:
      return "cC3H6";
      break;
    case 34:
      return "CH3OH";
      break;
    case 35:
      return "C2H5OH";
      break;
    case 36:
      return "C3H7OH";
      break;
    case 37:
      return "Cs";
      break;
    case 38:
      return "F2";
      break;
    case 39:
      return "CS2";
      break;
    case 40:
      return "COS";
      break;
    case 41:
      return "CD4";
      break;
    case 42:
      return "BF3";
      break;
    case 43:
      return "C2H2F4";
      break;
    case 44:
      return version <= 11 ? "He-3" : "TMA";
      break;
    case 45:
      return version <= 11 ? "He" : "paraH2";
      break;
    case 46:
      return version <= 11 ? "Ne" : "nC3H7OH";
      break;
    case 47:
      return "Ar";
      break;
    case 48:
      return version <= 11 ? "Kr" : "orthoD2";
      break;
    case 49:
      return "Xe";
      break;
    case 50:
      return "CHF3";
      break;
    case 51:
      return "CF3Br";
      break;
    case 52:
      return "C3F8";
      break;
    case 53:
      return "O3";
      break;
    case 54:
      return "Hg";
      break;
    case 55:
      return "H2S";
      break;
    case 56:
      return "nC4H10";
      break;
    case 57:
      return "nC5H12";
      break;
    case 58:
      return "N2";
      break;
    case 59:
      return "GeH4";
      break;
    case 60:
      return "SiH4";
      break;
    default:
      return "";
      break;
  }
  return "";
}
 
std::string MediumGas::GetGasName(std::string input) const {
  // Convert to upper-case
  for (unsigned int i = 0; i < input.length(); ++i) {
    input[i] = toupper(input[i]);
  }
 
  if (input.empty()) return "";
 
  if (input == "CF4" || input == "FREON" || input == "FREON-14" ||
      input == "TETRAFLUOROMETHANE") {
    return "CF4";
  } else if (input == "AR" || input == "ARGON") {
    return "Ar";
  } else if (input == "HE" || input == "HELIUM" || input == "HE-4" ||
             input == "HE 4" || input == "HE4" || input == "4-HE" || 
             input == "4 HE" || input == "4HE" || input == "HELIUM-4" || 
             input == "HELIUM 4" || input == "HELIUM4") {
    return "He";
  } else if (input == "HE-3" || input == "HE3" || input == "HELIUM-3" ||
      input == "HELIUM 3" || input == "HELIUM3") {
    return "He-3";
  } else if (input == "NE" || input == "NEON") {
    return "Ne";
  } else if (input == "KR" || input == "KRYPTON") {
    return "Kr";
  } else if (input == "XE" || input == "XENON") {
    return "Xe";
  } else if (input == "CH4" || input == "METHANE") {
    return "CH4";
  } else if (input == "C2H6" || input == "ETHANE") {
    return "C2H6";
  } else if (input == "C3H8" || input == "PROPANE") {
    return "C3H8";
  } else  if (input == "C4H10" || input == "ISOBUTANE" || input == "ISO" ||
              input == "IC4H10" || input == "ISO-C4H10" || input == "ISOC4H10") {
    return "iC4H10";
  } else if (input == "CO2" || input == "CARBON-DIOXIDE" ||
      input == "CARBON DIOXIDE" || input == "CARBONDIOXIDE") {
    return "CO2";
  } else if (input == "NEOPENTANE" || input == "NEO-PENTANE" || 
             input == "NEO-C5H12" || input == "NEOC5H12" || 
             input == "DIMETHYLPROPANE" || input == "C5H12") {
    return "neoC5H12";
  } else if (input == "H2O" || input == "WATER" || input == "WATER-VAPOUR" ||
      input == "WATER VAPOUR") {
    return "H2O";
  } else if (input == "O2" || input == "OXYGEN") {
    return "O2";
  } else if (input == "NI" || input == "NITRO" || input == "N2" ||
      input == "NITROGEN") {
    return "N2";
  } else if (input == "NO" || input == "NITRIC-OXIDE" || input == "NITRIC OXIDE" ||
      input == "NITROGEN-MONOXIDE" || input == "NITROGEN MONOXIDE") {
    return "NO";
  } else if (input == "N2O" || input == "NITROUS-OXIDE" || input == "NITROUS OXIDE" ||
      input == "DINITROGEN-MONOXIDE" || input == "LAUGHING-GAS") {
    return "N2O";
  } else if (input == "C2H4" || input == "ETHENE" || input == "ETHYLENE") {
    return "C2H4";
  } else if (input == "C2H2" || input == "ACETYL" || input == "ACETYLENE" ||
      input == "ETHYNE") {
    return "C2H2";
  } else if (input == "H2" || input == "HYDROGEN") {
    return "H2";
  } else if (input == "PARA H2" || input == "PARA-H2" ||
             input == "PARAH2" || input == "PARA HYDROGEN" ||
             input == "PARA-HYDROGEN" || input == "PARAHYDROGEN") {
    return "paraH2";
  } else if (input == "D2" || input == "DEUTERIUM") {
    return "D2";
  } else if (input == "ORTHO D2" || input == "ORTHO-D2" ||
             input == "ORTHOD2" || input == "ORTHO DEUTERIUM" ||
             input == "ORTHO-DEUTERIUM" || input == "ORTHODEUTERIUM") {
    return "orthoD2";
  } else if (input == "CO" || input == "CARBON-MONOXIDE" ||
      input == "CARBON MONOXIDE") {
    return "CO";
  } else if (input == "METHYLAL" || input == "METHYLAL-HOT" || input == "DMM" ||
      input == "DIMETHOXYMETHANE" || input == "FORMAL" || input == "C3H8O2") {
    // Methylal (dimethoxymethane, CH3-O-CH2-O-CH3, "hot" version)
    return "Methylal";
  } else if (input == "DME" || input == "DIMETHYL-ETHER" || input == "DIMETHYLETHER" ||
      input == "DIMETHYL ETHER" || input == "METHYL ETHER" ||
      input == "METHYL-ETHER" || input == "METHYLETHER" ||
      input == "WOOD-ETHER" || input == "WOODETHER" || input == "WOOD ETHER" ||
      input == "DIMETHYL OXIDE" || input == "DIMETHYL-OXIDE" ||
      input == "DEMEON" || input == "METHOXYMETHANE" || input == "C4H10O2") {
    return "DME";
  } else if (input == "REID-STEP") {
    return "Reid-Step";
  } else if (input == "MAXWELL-MODEL") {
    return "Maxwell-Model";
  } else if (input == "REID-RAMP") {
    return "Reid-Ramp";
  } else if (input == "C2F6" || input == "FREON-116" || input == "ZYRON-116" ||
      input == "ZYRON-116-N5" || input == "HEXAFLUOROETHANE") {
    return "C2F6";
  } else if (input == "SF6" || input == "SULPHUR-HEXAFLUORIDE" ||
      input == "SULFUR-HEXAFLUORIDE" || input == "SULPHUR HEXAFLUORIDE" ||
      input == "SULFUR HEXAFLUORIDE") {
    return "SF6";
  } else if (input == "NH3" || input == "AMMONIA") {
    return "NH3";
  } else if (input == "C3H6" || input == "PROPENE" || input == "PROPYLENE") {
    return "C3H6";
  } else if (input == "C-PROPANE" || input == "CYCLO-PROPANE" ||
      input == "CYCLO PROPANE" || input == "CYCLOPROPANE" ||
      input == "C-C3H6" || input == "CC3H6" || input == "CYCLO-C3H6") {
    return "cC3H6";
  } else if (input == "METHANOL" || input == "METHYL-ALCOHOL" ||
      input == "METHYL ALCOHOL" || input == "WOOD ALCOHOL" ||
      input == "WOOD-ALCOHOL" || input == "CH3OH") {
    return "CH3OH";
  } else if (input == "ETHANOL" || input == "ETHYL-ALCOHOL" ||
      input == "ETHYL ALCOHOL" || input == "GRAIN ALCOHOL" ||
      input == "GRAIN-ALCOHOL" || input == "C2H5OH") {
    return "C2H5OH";
  } else if (input == "PROPANOL" || input == "2-PROPANOL" || input == "ISOPROPYL" ||
      input == "ISO-PROPANOL" || input == "ISOPROPANOL" ||
      input == "ISOPROPYL ALCOHOL" || input == "ISOPROPYL-ALCOHOL" ||
      input == "C3H7OH") {
    return "C3H7OH";
  } else if (input == "NPROPANOL" || input == "N-PROPANOL" || 
             input == "1-PROPANOL" || input == "PROPYL ALCOHOL" ||
             input == "PROPYL-ALCOHOL" || input == "N-PROPYL ALCOHOL" ||
             input == "NC3H7OH" || input == "N-C3H7OH") {
    return "nC3H7OH"; 
  } else if (input == "CS" || input == "CESIUM" || input == "CAESIUM") {
    return "Cs";
  } else if (input == "F2" || input == "FLUOR" || input == "FLUORINE") {
    return "F2";
  } else if (input == "CS2" || input == "CARBON-DISULPHIDE" ||
      input == "CARBON-DISULFIDE" || input == "CARBON DISULPHIDE" ||
      input == "CARBON DISULFIDE") {
    return "CS2";
  } else if (input == "COS" || input == "CARBONYL-SULPHIDE" ||
      input == "CARBONYL-SULFIDE" || input == "CARBONYL SULFIDE") {
    return "COS";
  } else if (input == "DEUT-METHANE" || input == "DEUTERIUM-METHANE" ||
      input == "DEUTERATED-METHANE" || input == "DEUTERATED METHANE" ||
      input == "DEUTERIUM METHANE" || input == "CD4") {
    return "CD4";
  } else if (input == "BF3" || input == "BORON-TRIFLUORIDE" ||
      input == "BORON TRIFLUORIDE") {
    return "BF3";
  } else if (input == "C2HF5" || input == "C2H2F4" || input == "C2F5H" ||
      input == "C2F4H2" || input == "FREON 134" || input == "FREON 134A" ||
      input == "FREON-134" || input == "FREON-134-A" || input == "FREON 125" ||
      input == "ZYRON 125" || input == "FREON-125" || input == "ZYRON-125" ||
      input == "TETRAFLUOROETHANE" || input == "PENTAFLUOROETHANE") {
    // C2H2F4 (and C2HF5).
    return "C2H2F4";
  } else if (input == "TMA" || input == "TRIMETHYLAMINE" || input == "N(CH3)3" ||
      input == "N-(CH3)3") {
    return "TMA";
  } else if (input == "CHF3" || input == "FREON-23" || input == "TRIFLUOROMETHANE" ||
      input == "FLUOROFORM") {
    return "CHF3";
  } else if (input == "CF3BR" || input == "TRIFLUOROBROMOMETHANE" ||
      input == "BROMOTRIFLUOROMETHANE" || input == "HALON-1301" ||
      input == "HALON 1301" || input == "FREON-13B1" || input == "FREON 13BI") {
    return "CF3Br";
  } else if (input == "C3F8" || input == "OCTAFLUOROPROPANE" || input == "R218" ||
      input == "R-218" || input == "FREON 218" || input == "FREON-218" ||
      input == "PERFLUOROPROPANE" || input == "RC 218" || input == "PFC 218" ||
      input == "RC-218" || input == "PFC-218" || input == "FLUTEC PP30" ||
      input == "GENETRON 218") {
    return "C3F8";
  } else if (input == "OZONE" || input == "O3") {
    return "O3";
  } else if (input == "MERCURY" || input == "HG" || input == "HG2") {
    return "Hg";
  } else if (input == "H2S" || input == "HYDROGEN SULPHIDE" || input == "SEWER GAS" ||
      input == "HYDROGEN-SULPHIDE" || input == "SEWER-GAS" ||
      input == "HYDROGEN SULFIDE" || input == "HEPATIC ACID" ||
      input == "HYDROGEN-SULFIDE" || input == "HEPATIC-ACID" ||
      input == "SULFUR HYDRIDE" || input == "DIHYDROGEN MONOSULFIDE" ||
      input == "SULFUR-HYDRIDE" || input == "DIHYDROGEN-MONOSULFIDE" ||
      input == "DIHYDROGEN MONOSULPHIDE" || input == "SULPHUR HYDRIDE" ||
      input == "DIHYDROGEN-MONOSULPHIDE" || input == "SULPHUR-HYDRIDE" ||
      input == "STINK DAMP" || input == "SULFURATED HYDROGEN" ||
      input == "STINK-DAMP" || input == "SULFURATED-HYDROGEN") {
    return "H2S";
  } else if (input == "N-BUTANE" || input == "N-C4H10" || input == "NBUTANE" ||
      input == "NC4H10") {
    return "nC4H10";
  } else if (input == "N-PENTANE" || input == "N-C5H12" || input == "NPENTANE" ||
      input == "NC5H12") {
    return "nC5H12";
  } else if (input == "NI-PHELPS" || input == "NI PHELPS" ||
      input == "NITROGEN-PHELPS" || input == "NITROGEN PHELPHS" ||
      input == "N2-PHELPS" || input == "N2 PHELPS" || input == "N2 (PHELPS)") {
    // Nitrogen
    return "N2 (Phelps)";
  } else if (input == "GERMANE" || input == "GERM" || input == "GERMANIUM-HYDRIDE" ||
      input == "GERMANIUM HYDRIDE" || input == "GERMANIUM TETRAHYDRIDE" ||
      input == "GERMANIUM-TETRAHYDRIDE" || input == "GERMANOMETHANE" ||
      input == "MONOGERMANE" || input == "GEH4") {
    return "GeH4";
  } else if (input == "SILANE" || input == "SIL" || input == "SILICON-HYDRIDE" ||
             input == "SILICON HYDRIDE" || input == "SILICON-TETRAHYDRIDE" ||
             input == "SILICANE" || input == "MONOSILANE" || input == "SIH4") {
    return "SiH4";
  }
 
  std::cerr << m_className << "::GetGasName:\n"
            << "    Gas " << input << " is not recognized.\n";
  return "";
}
 
int MediumGas::GetGasNumberGasFile(const std::string& input) const {
 
  if (input.empty()) return 0;
 
  if (input == "CF4") {
    return 1;
  } else if (input == "Ar") {
    return 2;
  } else if (input == "He" || input == "He-4") {
    return 3;
  } else if (input == "He-3") {
    return 4;
  } else if (input == "Ne") {
    return 5;
  } else if (input == "Kr") {
    return 6;
  } else if (input == "Xe") {
    return 7;
  } else if (input == "CH4") {
    // Methane
    return 8;
  } else if (input == "C2H6") {
    // Ethane
    return 9;
  } else if (input == "C3H8") {
    // Propane
    return 10;
  } else if (input == "iC4H10") {
    // Isobutane
    return 11;
  } else if (input == "CO2") {
    return 12;
  } else if (input == "neoC5H12") {
    // Neopentane
    return 13;
  } else if (input == "H2O") {
    return 14;
  } else if (input == "O2") {
    return 15;
  } else if (input == "N2") {
    return 16;
  } else if (input == "NO") {
    // Nitric oxide
    return 17;
  } else if (input == "N2O") {
    // Nitrous oxide
    return 18;
  } else if (input == "C2H4") {
    // Ethene
    return 19;
  } else if (input == "C2H2") {
    // Acetylene
    return 20;
  } else if (input == "H2") {
    return 21;
  } else if (input == "D2") {
    // Deuterium
    return 22;
  } else if (input == "CO") {
    return 23;
  } else if (input == "Methylal") {
    // Methylal (dimethoxymethane, CH3-O-CH2-O-CH3, "hot" version)
    return 24;
  } else if (input == "DME") {
    return 25;
  } else if (input == "Reid-Step") {
    return 26;
  } else if (input == "Maxwell-Model") {
    return 27;
  } else if (input == "Reid-Ramp") {
    return 28;
  } else if (input == "C2F6") {
    return 29;
  } else if (input == "SF6") {
    return 30;
  } else if (input == "NH3") {
    return 31;
  } else if (input == "C3H6") {
    // Propene
    return 32;
  } else if (input == "cC3H6") {
    // Cyclopropane
    return 33;
  } else if (input == "CH3OH") {
    // Methanol
    return 34;
  } else if (input == "C2H5OH") {
    // Ethanol
    return 35;
  } else if (input == "C3H7OH") {
    // Propanol
    return 36;
  } else if (input == "Cs") {
    return 37;
  } else if (input == "F2") {
    // Fluorine
    return 38;
  } else if (input == "CS2") {
    return 39;
  } else if (input == "COS") {
    return 40;
  } else if (input == "CD4") {
    // Deuterated methane
    return 41;
  } else if (input == "BF3") {
    return 42;
  } else if (input == "C2HF5" || input == "C2H2F4") {
    return 43;
  } else if (input == "TMA") {
    return 44;
  } else if (input == "paraH2") {
    return 45;
  } else if (input == "nC3H7OH") {
    return 46;
  } else if (input == "orthoD2") {
    return 48;
  } else if (input == "CHF3") {
    return 50;
  } else if (input == "CF3Br") {
    return 51;
  } else if (input == "C3F8") {
    return 52;
  } else if (input == "O3") {
    // Ozone
    return 53;
  } else if (input == "Hg") {
    return 54;
  } else if (input == "H2S") {
    return 55;
  } else if (input == "nC4H10") {
    // n-butane
    return 56;
  } else if (input == "nC5H12") {
    // n-pentane
    return 57;
  } else if (input == "N2 (Phelps)") {
    return 58;
  } else if (input == "GeH4") {
    // Germane
    return 59;
  } else if (input == "SiH4") {
    // Silane
    return 60;
  }
 
  std::cerr << m_className << "::GetGasNumberGasFile:\n"
            << "    Gas " << input << " not found.\n";
  return 0;
}
 
bool MediumGas::GetPhotoAbsorptionCrossSection(const double e, double& sigma,
                                               const unsigned int i) {
  if (i >= m_nMaxGases) {
    std::cerr << m_className 
              << "::GetPhotoAbsorptionCrossSection: Index out of range.\n";
    return false;
  }
 
  OpticalData optData;
  if (!optData.IsAvailable(m_gas[i])) return false;
  double eta = 0.;
  return optData.GetPhotoabsorptionCrossSection(m_gas[i], e, sigma, eta);
}
}