G4DNAELSEPAElasticModel.cc

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// $Id: G4DNAELSEPAElasticModel.cc 97497 2016-06-03 11:41:57Z matkara $
//
 
#include "G4DNAELSEPAElasticModel.hh"
#include "G4PhysicalConstants.hh"
#include "G4SystemOfUnits.hh"
#include "G4DNAMolecularMaterial.hh"
#include "G4Exp.hh"
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
using namespace std;
 
#define ELSEPA_VERBOSE
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4DNAELSEPAElasticModel::
G4DNAELSEPAElasticModel(const G4ParticleDefinition*, const G4String& nam) :
    G4VEmModel(nam), isInitialised(false)
{
  SetLowEnergyLimit(10. * eV);
  SetHighEnergyLimit(1. * MeV);
 
  verboseLevel = 0;
  // Verbosity scale:
  // 0 = nothing 
  // 1 = warning for energy non-conservation 
  // 2 = details of energy budget
  // 3 = calculation of cross sections, file openings, sampling of atoms
  // 4 = entering in methods
 
#ifdef ELSEPA_VERBOSE
  if (verboseLevel > 0)
  {
    G4cout << "ELSEPA Elastic model is constructed "
           << G4endl
           << "Energy range: "
           << LowEnergyLimit() / eV << " eV - "
           << HighEnergyLimit() / MeV << " MeV"
           << G4endl;
  }
#endif
  
  fParticleChangeForGamma = 0;
  fpMolWaterDensity = 0;
  fpData = 0;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4DNAELSEPAElasticModel::~G4DNAELSEPAElasticModel()
{
  // For total cross section
  if(fpData) delete fpData;
 
  // For final state
  eVecm.clear();
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
void G4DNAELSEPAElasticModel::Initialise(const G4ParticleDefinition* particle,
                                           const G4DataVector& /*cuts*/)
{
#ifdef ELSEPA_VERBOSE
  if (verboseLevel > 3)
  {
    G4cout << "Calling G4DNAELSEPAElasticModel::Initialise()" << G4endl;
  }
#endif
  
  if(particle->GetParticleName() != "e-")
  {
    G4Exception("G4DNAELSEPAElasticModel::Initialise",
                "em0002",
                FatalException,
                "Model not applicable to particle type.");
  }
 
  // Energy limits
 
  if (LowEnergyLimit() < 10*eV)
  {
    G4cout << "G4DNAELSEPAElasticModel: low energy limit increased from "
           << LowEnergyLimit()/eV << " eV to " << 10 << " eV"
           << G4endl;
    SetLowEnergyLimit(10.*eV);
  }
 
  if (HighEnergyLimit() > 1.*MeV)
  {
    G4cout << "G4DNAELSEPAElasticModel: high energy limit decreased from "
           << HighEnergyLimit()/MeV << " MeV to " << 1. << " MeV"
           << G4endl;
    SetHighEnergyLimit(1.*MeV);
  }
 
  if (isInitialised) { return; }
 
  // *** ELECTRON
  // For total cross section
  // Reading of data files 
 
  G4double scaleFactor = 1*cm*cm;
 
  G4String fileElectron("dna/sigma_elastic_e_elsepa_muffin");
 
//  Alternative option
//  G4String fileElectron("dna/sigma_elastic_e_elsepa_free");
 
  fpData = new G4DNACrossSectionDataSet(new G4LogLogInterpolation(),
                                        eV,
                                        scaleFactor );
  fpData->LoadData(fileElectron);
  // For final state
 
  char *path = getenv("G4LEDATA");
 
  if (!path)
  {
    G4Exception("G4ELSEPAElasticModel::Initialise",
                "em0006",
                FatalException,
                "G4LEDATA environment variable not set.");
    return;
  }
 
  std::ostringstream eFullFileName;
 
//  Alternative option
//  eFullFileName << path << "/dna/sigmadiff_cumulated_elastic_e_elsepa_free.dat";
 
  eFullFileName << path << "/dna/sigmadiff_cumulated_elastic_e_elsepa_muffin.dat";
  std::ifstream eDiffCrossSection(eFullFileName.str().c_str());
 
  if (!eDiffCrossSection)
  {
    G4ExceptionDescription errMsg;
    errMsg << "Missing data file:/dna/sigmadiff_cumulated_elastic_e_elsepa_muffin.dat; "
           << "please use G4EMLOW7.8 and above.";
    
    G4Exception("G4DNAELSEPAElasticModel::Initialise",
                "em0003",
                FatalException,
                errMsg);
  }
 
  // March 25th, 2014 - Vaclav Stepan, Sebastien Incerti
  // Added clear for MT
 
  eTdummyVec.clear();
  eVecm.clear();
  eDiffCrossSectionData.clear();
 
  //
 
  eTdummyVec.push_back(0.);
 
  while(!eDiffCrossSection.eof())
  {
    double tDummy;
    double eDummy;
    eDiffCrossSection >> tDummy >> eDummy;
 
    // SI : mandatory eVecm initialization
 
    if (tDummy != eTdummyVec.back())
    {
      eTdummyVec.push_back(tDummy);
      eVecm[tDummy].push_back(0.);
    }
 
    eDiffCrossSection >> eDiffCrossSectionData[tDummy][eDummy];
 
    if (eDummy != eVecm[tDummy].back()) eVecm[tDummy].push_back(eDummy);
  }
 
  // End final state
#ifdef ELSEPA_VERBOSE
  if (verboseLevel>0)
  {
    if (verboseLevel > 2)
    {
      G4cout << "Loaded cross section files for ELSEPA Elastic model" << G4endl;
    }
 
    G4cout << "ELSEPA Elastic model is initialized " << G4endl
           << "Energy range: "
           << LowEnergyLimit() / eV << " eV - "
           << HighEnergyLimit() / MeV << " MeV"
           << G4endl;
  }
#endif
 
  // Initialize water density pointer
  G4DNAMolecularMaterial::Instance()->Initialize();
  
  fpMolWaterDensity = G4DNAMolecularMaterial::Instance()->
    GetNumMolPerVolTableFor(G4Material::GetMaterial("G4_WATER"));
 
  fParticleChangeForGamma = GetParticleChangeForGamma();
  isInitialised = true;
 
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double
G4DNAELSEPAElasticModel::
CrossSectionPerVolume(const G4Material* material,
#ifdef ELSEPA_VERBOSE
                      const G4ParticleDefinition* p,
#else
                      const G4ParticleDefinition*,
#endif
                      G4double ekin,
                      G4double,
                      G4double)
{
#ifdef ELSEPA_VERBOSE
  if (verboseLevel > 3)
  {
   G4cout << "Calling CrossSectionPerVolume() of G4DNAELSEPAElasticModel"
          << G4endl;
  }
#endif
 
  // Calculate total cross section for model
 
  G4double sigma = 0.;
  G4double waterDensity = (*fpMolWaterDensity)[material->GetIndex()];
 
  if(waterDensity!= 0.0)
  {
    if (ekin < HighEnergyLimit() && ekin >= LowEnergyLimit())
    {
      //SI : XS must not be zero otherwise sampling of secondaries method ignored
      //
      sigma = fpData->FindValue(ekin);
    }
 
#ifdef ELSEPA_VERBOSE
    if (verboseLevel > 2)
    {
      G4cout << "__________________________________" << G4endl;
      G4cout << "=== G4DNAELSEPAElasticModel - XS INFO START" << G4endl;
      G4cout << "=== Kinetic energy(eV)=" << ekin/eV << " particle : " << p->GetParticleName() << G4endl;
      G4cout << "=== Cross section per water molecule (cm^2)=" << sigma/cm/cm << G4endl;
      G4cout << "=== Cross section per water molecule (cm^-1)=" << sigma*waterDensity/(1./cm) << G4endl;
      G4cout << "=== G4DNAELSEPAElasticModel - XS INFO END" << G4endl;
    }
#endif
  }
 
  return sigma*waterDensity;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
void G4DNAELSEPAElasticModel::SampleSecondaries(std::vector<G4DynamicParticle*>* /*fvect*/,
                                                  const G4MaterialCutsCouple* /*couple*/,
                                                  const G4DynamicParticle* aDynamicElectron,
                                                  G4double,
                                                  G4double)
{
 
 
#ifdef ELSEPA_VERBOSE
  if (verboseLevel > 3)
  {
    G4cout << "Calling SampleSecondaries() of G4DNAELSEPAElasticModel" << G4endl;
  }
#endif
 
  G4double electronEnergy0 = aDynamicElectron->GetKineticEnergy();
 
//  if (electronEnergy0 < HighEnergyLimit()) // necessaire ?
  {
    G4double cosTheta = RandomizeCosTheta(electronEnergy0);
 
    G4double phi = 2. * pi * G4UniformRand();
 
    G4ThreeVector zVers = aDynamicElectron->GetMomentumDirection();
    G4ThreeVector xVers = zVers.orthogonal();
    G4ThreeVector yVers = zVers.cross(xVers);
 
    G4double xDir = std::sqrt(1. - cosTheta*cosTheta);
    G4double yDir = xDir;
    xDir *= std::cos(phi);
    yDir *= std::sin(phi);
 
    G4ThreeVector zPrimeVers((xDir*xVers + yDir*yVers + cosTheta*zVers));
 
    fParticleChangeForGamma->ProposeMomentumDirection(zPrimeVers.unit());
 
    fParticleChangeForGamma->SetProposedKineticEnergy(electronEnergy0);
    // necessaire ?
  }
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4DNAELSEPAElasticModel::Theta(//G4ParticleDefinition * particleDefinition,
                                          G4double k,
                                          G4double integrDiff)
{
  G4double theta = 0.;
  G4double valueT1 = 0;
  G4double valueT2 = 0;
  G4double valueE21 = 0;
  G4double valueE22 = 0;
  G4double valueE12 = 0;
  G4double valueE11 = 0;
  G4double xs11 = 0;
  G4double xs12 = 0;
  G4double xs21 = 0;
  G4double xs22 = 0;
 
//  if (particleDefinition == G4Electron::ElectronDefinition()) // necessaire ?
  {
    std::vector<double>::iterator t2 = std::upper_bound(eTdummyVec.begin(),
                                                        eTdummyVec.end(), k);
    std::vector<double>::iterator t1 = t2 - 1;
 
    std::vector<double>::iterator e12 = std::upper_bound(eVecm[(*t1)].begin(),
                                                         eVecm[(*t1)].end(),
                                                         integrDiff);
    std::vector<double>::iterator e11 = e12 - 1;
 
    std::vector<double>::iterator e22 = std::upper_bound(eVecm[(*t2)].begin(),
                                                         eVecm[(*t2)].end(),
                                                         integrDiff);
    std::vector<double>::iterator e21 = e22 - 1;
 
    valueT1 = *t1;
    valueT2 = *t2;
    valueE21 = *e21;
    valueE22 = *e22;
    valueE12 = *e12;
    valueE11 = *e11;
 
    xs11 = eDiffCrossSectionData[valueT1][valueE11];
    xs12 = eDiffCrossSectionData[valueT1][valueE12];
    xs21 = eDiffCrossSectionData[valueT2][valueE21];
    xs22 = eDiffCrossSectionData[valueT2][valueE22];
  }
 
  if (xs11 == 0 && xs12 == 0 && xs21 == 0 && xs22 == 0) return (0.);
 
  theta = QuadInterpolator(valueE11, valueE12, valueE21, valueE22, xs11, xs12,
                           xs21, xs22, valueT1, valueT2, k, integrDiff);
 
  return theta;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4DNAELSEPAElasticModel::LinLogInterpolate(G4double e1,
                                                      G4double e2,
                                                      G4double e,
                                                      G4double xs1,
                                                      G4double xs2)
{
  G4double d1 = std::log(xs1);
  G4double d2 = std::log(xs2);
  G4double value = G4Exp(d1 + (d2 - d1) * (e - e1) / (e2 - e1));
  return value;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4DNAELSEPAElasticModel::LinLinInterpolate(G4double e1,
                                                      G4double e2,
                                                      G4double e,
                                                      G4double xs1,
                                                      G4double xs2)
{
  G4double d1 = xs1;
  G4double d2 = xs2;
  G4double value = (d1 + (d2 - d1) * (e - e1) / (e2 - e1));
  return value;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4DNAELSEPAElasticModel::LogLogInterpolate(G4double e1,
                                                      G4double e2,
                                                      G4double e,
                                                      G4double xs1,
                                                      G4double xs2)
{
  G4double a = (std::log10(xs2) - std::log10(xs1))
      / (std::log10(e2) - std::log10(e1));
  G4double b = std::log10(xs2) - a * std::log10(e2);
  G4double sigma = a * std::log10(e) + b;
  G4double value = (std::pow(10., sigma));
  return value;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4DNAELSEPAElasticModel::QuadInterpolator(G4double e11,
                                                     G4double e12,
                                                     G4double e21,
                                                     G4double e22,
                                                     G4double xs11,
                                                     G4double xs12,
                                                     G4double xs21,
                                                     G4double xs22,
                                                     G4double t1,
                                                     G4double t2,
                                                     G4double t,
                                                     G4double e)
{
  // Log-Log
  /*
   G4double interpolatedvalue1 = LogLogInterpolate(e11, e12, e, xs11, xs12);
   G4double interpolatedvalue2 = LogLogInterpolate(e21, e22, e, xs21, xs22);
   G4double value = LogLogInterpolate(t1, t2, t, interpolatedvalue1, interpolatedvalue2);
 
 
   // Lin-Log
   G4double interpolatedvalue1 = LinLogInterpolate(e11, e12, e, xs11, xs12);
   G4double interpolatedvalue2 = LinLogInterpolate(e21, e22, e, xs21, xs22);
   G4double value = LinLogInterpolate(t1, t2, t, interpolatedvalue1, interpolatedvalue2);
   */
 
  // Lin-Lin
  G4double interpolatedvalue1 = LinLinInterpolate(e11, e12, e, xs11, xs12);
  G4double interpolatedvalue2 = LinLinInterpolate(e21, e22, e, xs21, xs22);
  G4double value = LinLinInterpolate(t1, t2, t, interpolatedvalue1,
                                     interpolatedvalue2);
 
  return value;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4DNAELSEPAElasticModel::RandomizeCosTheta(G4double k)
{
 
  G4double integrdiff = 0;
  G4double uniformRand = G4UniformRand();
  integrdiff = uniformRand;
 
  G4double theta = 0.;
  G4double cosTheta = 0.;
  theta = Theta(//G4Electron::ElectronDefinition(),
                k / eV, integrdiff);
 
  cosTheta = std::cos(theta * pi / 180);
 
  return cosTheta;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
void G4DNAELSEPAElasticModel::SetKillBelowThreshold(G4double)
{
  G4ExceptionDescription errMsg;
  errMsg << "The method G4DNAELSEPAElasticModel::SetKillBelowThreshold is deprecated";
  
  G4Exception("G4DNAELSEPAElasticModel::SetKillBelowThreshold",
              "deprecated",
              JustWarning,
              errMsg);
}