#include <G4DNAPolyNucleotideReactionProcess.hh>

Inheritance diagram for G4DNAPolyNucleotideReactionProcess:

Public Member Functions
	G4DNAPolyNucleotideReactionProcess (const G4String &aName="DNAStaticMoleculeReactionProcess", G4int verbosityLevel=0)

	~G4DNAPolyNucleotideReactionProcess () override

void	SetDNADamageReactionModel (G4VDNAHitModel *pModel)

G4bool	IsApplicable (const G4ParticleDefinition &) override

G4double	CalculateTimeStep (const G4Track &trackA, const G4double &userTimeStep=0)

void	StartTracking (G4Track *aTrack) override

G4double	PostStepGetPhysicalInteractionLength (const G4Track &, G4double, G4ForceCondition *pForceCond) override

G4VParticleChange *	PostStepDoIt (const G4Track &track, const G4Step &) override

G4double	GetMeanFreePath (const G4Track &, G4double, G4ForceCondition *) override

G4DNAPolyNucleotideReactionProcess &	operator= (const G4DNAPolyNucleotideReactionProcess &)=delete

void	SetVerbose (G4int verbose)

Public Member Functions inherited from G4VITDiscreteProcess
	G4VITDiscreteProcess (const G4String &, G4ProcessType aType=fNotDefined)

	G4VITDiscreteProcess (G4VITDiscreteProcess &)

virtual	~G4VITDiscreteProcess ()

virtual G4double	PostStepGetPhysicalInteractionLength (const G4Track &track, G4double previousStepSize, G4ForceCondition *condition)

virtual G4VParticleChange *	PostStepDoIt (const G4Track &, const G4Step &)

virtual G4double	AlongStepGetPhysicalInteractionLength (const G4Track &, G4double, G4double, G4double &, G4GPILSelection *)

virtual G4double	AtRestGetPhysicalInteractionLength (const G4Track &, G4ForceCondition *)

virtual G4VParticleChange *	AtRestDoIt (const G4Track &, const G4Step &)

virtual G4VParticleChange *	AlongStepDoIt (const G4Track &, const G4Step &)

Public Member Functions inherited from G4VITProcess
	G4VITProcess (const G4String &name, G4ProcessType type=fNotDefined)

virtual	~G4VITProcess ()

	G4VITProcess (const G4VITProcess &other)

G4VITProcess &	operator= (const G4VITProcess &other)

G4bool	operator== (const G4VITProcess &right) const

G4bool	operator!= (const G4VITProcess &right) const

size_t	GetProcessID () const

G4shared_ptr< G4ProcessState_Lock >	GetProcessState ()

void	SetProcessState (G4shared_ptr< G4ProcessState_Lock > aProcInfo)

void	ResetProcessState ()

virtual void	StartTracking (G4Track *)

virtual void	BuildPhysicsTable (const G4ParticleDefinition &)

G4double	GetInteractionTimeLeft ()

virtual void	ResetNumberOfInteractionLengthLeft ()

G4bool	ProposesTimeStep () const

Public Member Functions inherited from G4VProcess
	G4VProcess (const G4String &aName="NoName", G4ProcessType aType=fNotDefined)

	G4VProcess (const G4VProcess &right)

virtual	~G4VProcess ()

G4VProcess &	operator= (const G4VProcess &)=delete

G4bool	operator== (const G4VProcess &right) const

G4bool	operator!= (const G4VProcess &right) const

virtual G4VParticleChange *	PostStepDoIt (const G4Track &track, const G4Step &stepData)=0

virtual G4VParticleChange *	AlongStepDoIt (const G4Track &track, const G4Step &stepData)=0

virtual G4VParticleChange *	AtRestDoIt (const G4Track &track, const G4Step &stepData)=0

virtual G4double	AlongStepGetPhysicalInteractionLength (const G4Track &track, G4double previousStepSize, G4double currentMinimumStep, G4double &proposedSafety, G4GPILSelection *selection)=0

virtual G4double	AtRestGetPhysicalInteractionLength (const G4Track &track, G4ForceCondition *condition)=0

virtual G4double	PostStepGetPhysicalInteractionLength (const G4Track &track, G4double previousStepSize, G4ForceCondition *condition)=0

G4double	GetCurrentInteractionLength () const

void	SetPILfactor (G4double value)

G4double	GetPILfactor () const

G4double	AlongStepGPIL (const G4Track &track, G4double previousStepSize, G4double currentMinimumStep, G4double &proposedSafety, G4GPILSelection *selection)

G4double	AtRestGPIL (const G4Track &track, G4ForceCondition *condition)

G4double	PostStepGPIL (const G4Track &track, G4double previousStepSize, G4ForceCondition *condition)

virtual G4bool	IsApplicable (const G4ParticleDefinition &)

virtual void	BuildPhysicsTable (const G4ParticleDefinition &)

virtual void	PreparePhysicsTable (const G4ParticleDefinition &)

virtual G4bool	StorePhysicsTable (const G4ParticleDefinition *, const G4String &, G4bool)

virtual G4bool	RetrievePhysicsTable (const G4ParticleDefinition *, const G4String &, G4bool)

const G4String &	GetPhysicsTableFileName (const G4ParticleDefinition *, const G4String &directory, const G4String &tableName, G4bool ascii=false)

const G4String &	GetProcessName () const

G4ProcessType	GetProcessType () const

void	SetProcessType (G4ProcessType)

G4int	GetProcessSubType () const

void	SetProcessSubType (G4int)

virtual const G4VProcess *	GetCreatorProcess () const

virtual void	StartTracking (G4Track *)

virtual void	EndTracking ()

virtual void	SetProcessManager (const G4ProcessManager *)

virtual const G4ProcessManager *	GetProcessManager ()

virtual void	ResetNumberOfInteractionLengthLeft ()

G4double	GetNumberOfInteractionLengthLeft () const

G4double	GetTotalNumberOfInteractionLengthTraversed () const

G4bool	isAtRestDoItIsEnabled () const

G4bool	isAlongStepDoItIsEnabled () const

G4bool	isPostStepDoItIsEnabled () const

virtual void	DumpInfo () const

virtual void	ProcessDescription (std::ostream &outfile) const

void	SetVerboseLevel (G4int value)

G4int	GetVerboseLevel () const

virtual void	SetMasterProcess (G4VProcess *masterP)

const G4VProcess *	GetMasterProcess () const

virtual void	BuildWorkerPhysicsTable (const G4ParticleDefinition &part)

virtual void	PrepareWorkerPhysicsTable (const G4ParticleDefinition &)

Protected Attributes
G4VParticleChange	fParticleChange

Protected Attributes inherited from G4VITProcess
G4shared_ptr< G4ProcessState >	fpState

G4bool	fProposesTimeStep

Protected Attributes inherited from G4VProcess
const G4ProcessManager *	aProcessManager = nullptr

G4VParticleChange *	pParticleChange = nullptr

G4ParticleChange	aParticleChange

G4double	theNumberOfInteractionLengthLeft = -1.0

G4double	currentInteractionLength = -1.0

G4double	theInitialNumberOfInteractionLength = -1.0

G4String	theProcessName

G4String	thePhysicsTableFileName

G4ProcessType	theProcessType = fNotDefined

G4int	theProcessSubType = -1

G4double	thePILfactor = 1.0

G4int	verboseLevel = 0

G4bool	enableAtRestDoIt = true

G4bool	enableAlongStepDoIt = true

G4bool	enablePostStepDoIt = true

Additional Inherited Members
Static Public Member Functions inherited from G4VITProcess
static const size_t &	GetMaxProcessIndex ()

Static Public Member Functions inherited from G4VProcess
static const G4String &	GetProcessTypeName (G4ProcessType)

virtual G4double	GetMeanFreePath (const G4Track &aTrack, G4double previousStepSize, G4ForceCondition *condition)=0

Protected Member Functions inherited from G4VITProcess
void	RetrieveProcessInfo ()

void	CreateInfo ()

template<typename T >
T *	GetState ()

virtual void	SubtractNumberOfInteractionLengthLeft (G4double previousStepSize)

virtual void	ClearInteractionTimeLeft ()

virtual void	ClearNumberOfInteractionLengthLeft ()

void	SetInstantiateProcessState (G4bool flag)

G4bool	InstantiateProcessState ()

Protected Member Functions inherited from G4VProcess
void	SubtractNumberOfInteractionLengthLeft (G4double prevStepSize)

void	ClearNumberOfInteractionLengthLeft ()

Detailed Description

Definition at line 37 of file G4DNAPolyNucleotideReactionProcess.hh.

Constructor & Destructor Documentation

◆ G4DNAPolyNucleotideReactionProcess()

G4DNAPolyNucleotideReactionProcess::G4DNAPolyNucleotideReactionProcess	(	const G4String &	aName = `"DNAStaticMoleculeReactionProcess"`,
		G4int	verbosityLevel = `0`
	)

explicit

Definition at line 46 of file G4DNAPolyNucleotideReactionProcess.cc.

  : G4VITDiscreteProcess(aName, fUserDefined)
  , fHasAlreadyReachedNullTime(false)
  , fVerbose(verbosityLevel)
  , fRCutOff(G4IRTUtils::GetDNADistanceCutOff())
  , fpDamageModel(nullptr)
{
  pParticleChange     = &fParticleChange;
  enableAtRestDoIt    = false;
  enableAlongStepDoIt = false;
  enablePostStepDoIt  = true;
  fProposesTimeStep   = true;
  SetProcessSubType(fLowEnergyStaticMol);
  G4VITProcess::SetInstantiateProcessState(false);
}

◆ ~G4DNAPolyNucleotideReactionProcess()

G4DNAPolyNucleotideReactionProcess::~G4DNAPolyNucleotideReactionProcess ( )

override

Definition at line 63 of file G4DNAPolyNucleotideReactionProcess.cc.

{
  delete fpDamageModel;  // for now, this process handls only one model
}

Member Function Documentation

◆ CalculateTimeStep()

G4double G4DNAPolyNucleotideReactionProcess::CalculateTimeStep	(	const G4Track &	trackA,
		const G4double &	userTimeStep = `0`
	)

Definition at line 75 of file G4DNAPolyNucleotideReactionProcess.cc.

{
  PrepareState();
  fHasAlreadyReachedNullTime      = false;
  State(fSampledMinTimeStep)      = DBL_MAX;
  State(theInteractionTimeLeft)   = DBL_MAX;
  State(currentInteractionLength) = -1;
#ifdef G4VERBOSE
  if(fVerbose > 1)
  {
    auto pMoleculeA = GetMolecule(trackA);
    G4cout << "________________________________________________________________"
              "_______"
           << G4endl;
    G4cout << "G4DNAPolyNucleotideReactionProcess::CalculateTimleStep"
           << G4endl;
    G4cout << "Check done for molecule : " << pMoleculeA->GetName() << " ("
           << trackA.GetTrackID() << ") " << G4endl;
  }
#endif
  //__________________________________________________________________
  // Retrieve general informations for making reactions
  G4double reactionTime =
    fpDamageModel->CalculateReactionTime(trackA, State(fNodeReactant));
 
  if(reactionTime < 0)
  {
    return DBL_MAX;
  }
  State(fSampledMinTimeStep)      = reactionTime;
  State(theInteractionTimeLeft)   = State(fSampledMinTimeStep);
  State(currentInteractionLength) = State(theInteractionTimeLeft);
 
#ifdef G4VERBOSE
  if(fVerbose > 1)
  {
    G4cout << " theInteractionTimeLeft : " << State(theInteractionTimeLeft)
           << G4endl;
    G4cout << " State(fNodeReactant) : " << State(fNodeReactant).index()
           << G4endl;
 
    G4cout << "________________________________________________________________"
              "_______"
           << G4endl;
  }
#endif
 
  return State(fSampledMinTimeStep);
}

Referenced by PostStepGetPhysicalInteractionLength().

◆ GetMeanFreePath()

G4double G4DNAPolyNucleotideReactionProcess::GetMeanFreePath	(	const G4Track &	,
		G4double	,
		G4ForceCondition *
	)

inlineoverridevirtual

Implements G4VITDiscreteProcess.

Definition at line 60 of file G4DNAPolyNucleotideReactionProcess.hh.

  {
    return DBL_MAX;
  }

◆ IsApplicable()

G4bool G4DNAPolyNucleotideReactionProcess::IsApplicable ( const G4ParticleDefinition & )

inlineoverridevirtual

Reimplemented from G4VProcess.

Definition at line 47 of file G4DNAPolyNucleotideReactionProcess.hh.

47{ return true; }

◆ operator=()

G4DNAPolyNucleotideReactionProcess & G4DNAPolyNucleotideReactionProcess::operator= ( const G4DNAPolyNucleotideReactionProcess & )

delete

◆ PostStepDoIt()

G4VParticleChange * G4DNAPolyNucleotideReactionProcess::PostStepDoIt	(	const G4Track &	track,
		const G4Step &
	)

overridevirtual

Reimplemented from G4VITDiscreteProcess.

Definition at line 162 of file G4DNAPolyNucleotideReactionProcess.cc.

{
  PrepareState();
  auto isReacted = fpDamageModel->DoReaction(
    track, State(theInteractionTimeLeft), State(fNodeReactant));
  if(!isReacted)
  {
    // no reaction even this process is called
    fParticleChange.Initialize(track);
    return pParticleChange;
  }
  fParticleChange.Initialize(track);  // To initialise TouchableChange
  fParticleChange.ProposeTrackStatus(fStopAndKill);
  State(fPreviousTimeAtPreStepPoint) = -1;
  return pParticleChange;
}

◆ PostStepGetPhysicalInteractionLength()

G4double G4DNAPolyNucleotideReactionProcess::PostStepGetPhysicalInteractionLength	(	const G4Track &	track,
		G4double	,
		G4ForceCondition *	pForceCond
	)

overridevirtual

Reimplemented from G4VITDiscreteProcess.

Definition at line 127 of file G4DNAPolyNucleotideReactionProcess.cc.

{
  PrepareState();
  CalculateTimeStep(track);
  *pForceCond = NotForced;
 
  G4double previousTimeStep(-1.);
 
  if(State(fPreviousTimeAtPreStepPoint) != -1)
  {
    previousTimeStep =
      track.GetGlobalTime() - State(fPreviousTimeAtPreStepPoint);
  }
 
  State(fPreviousTimeAtPreStepPoint) = track.GetGlobalTime();
 
  if((fpState->currentInteractionLength <= 0) || (previousTimeStep < 0.0) ||
     (fpState->theNumberOfInteractionLengthLeft <= 0.0))
  {
    ResetNumberOfInteractionLengthLeft();
  }
  else if(previousTimeStep > 0.0)
  {
    SubtractNumberOfInteractionLengthLeft(
      previousTimeStep);  // TODO need to check this
  }
  return State(theInteractionTimeLeft) * -1;
  // return value * -1;//should regard this !
}

◆ SetDNADamageReactionModel()

void G4DNAPolyNucleotideReactionProcess::SetDNADamageReactionModel ( G4VDNAHitModel * pModel )

inline

Definition at line 98 of file G4DNAPolyNucleotideReactionProcess.hh.

{
  fpDamageModel = pModel;
}

◆ SetVerbose()

void G4DNAPolyNucleotideReactionProcess::SetVerbose ( G4int verbose )

inline

Definition at line 93 of file G4DNAPolyNucleotideReactionProcess.hh.

{
  fVerbose = verbose;
}

◆ StartTracking()

void G4DNAPolyNucleotideReactionProcess::StartTracking ( G4Track * aTrack )

overridevirtual

Reimplemented from G4VITProcess.

Definition at line 179 of file G4DNAPolyNucleotideReactionProcess.cc.

{
  G4VProcess::StartTracking(track);
  G4VITProcess::fpState.reset(new G4PolyNucleotideReactionState());
  G4VITProcess::StartTracking(track);
}

Member Data Documentation

◆ fParticleChange

G4VParticleChange G4DNAPolyNucleotideReactionProcess::fParticleChange

protected

Definition at line 70 of file G4DNAPolyNucleotideReactionProcess.hh.

Referenced by G4DNAPolyNucleotideReactionProcess(), and PostStepDoIt().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ G4DNAPolyNucleotideReactionProcess()

◆ ~G4DNAPolyNucleotideReactionProcess()

Member Function Documentation

◆ CalculateTimeStep()

◆ GetMeanFreePath()

◆ IsApplicable()

◆ operator=()

◆ PostStepDoIt()

◆ PostStepGetPhysicalInteractionLength()

◆ SetDNADamageReactionModel()

◆ SetVerbose()

◆ StartTracking()

Member Data Documentation

◆ fParticleChange