#include <G4DNABornIonisationModel2.hh>

Inheritance diagram for G4DNABornIonisationModel2:

Public Member Functions
	G4DNABornIonisationModel2 (const G4ParticleDefinition *p=nullptr, const G4String &nam="DNABornIonisationModel")

	~G4DNABornIonisationModel2 () override

G4DNABornIonisationModel2 &	operator= (const G4DNABornIonisationModel2 &right)=delete

	G4DNABornIonisationModel2 (const G4DNABornIonisationModel2 &)=delete

void	Initialise (const G4ParticleDefinition , const G4DataVector &= (new G4DataVector())) override

G4double	CrossSectionPerVolume (const G4Material material, const G4ParticleDefinition p, G4double ekin, G4double emin, G4double emax) override

void	SampleSecondaries (std::vector< G4DynamicParticle * > , const G4MaterialCutsCouple , const G4DynamicParticle *, G4double tmin, G4double maxEnergy) override

G4double	GetPartialCrossSection (const G4Material , G4int, const G4ParticleDefinition , G4double) override

G4double	DifferentialCrossSection (G4ParticleDefinition *aParticleDefinition, G4double k, G4double energyTransfer, G4int shell)

G4double	TransferedEnergy (G4ParticleDefinition *aParticleDefinition, G4double incomingParticleEnergy, G4int shell, G4double random)

void	SelectFasterComputation (G4bool input)

void	SelectStationary (G4bool input)

void	SelectSPScaling (G4bool input)

Public Member Functions inherited from G4VEmModel
	G4VEmModel (const G4String &nam)

virtual	~G4VEmModel ()

virtual void	InitialiseLocal (const G4ParticleDefinition , G4VEmModel masterModel)

virtual void	InitialiseForMaterial (const G4ParticleDefinition , const G4Material )

virtual void	InitialiseForElement (const G4ParticleDefinition *, G4int Z)

virtual G4double	ComputeDEDXPerVolume (const G4Material , const G4ParticleDefinition , G4double kineticEnergy, G4double cutEnergy=DBL_MAX)

virtual G4double	ComputeCrossSectionPerAtom (const G4ParticleDefinition *, G4double kinEnergy, G4double Z, G4double A=0., G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

virtual G4double	ComputeCrossSectionPerShell (const G4ParticleDefinition *, G4int Z, G4int shellIdx, G4double kinEnergy, G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

virtual G4double	ChargeSquareRatio (const G4Track &)

virtual G4double	GetChargeSquareRatio (const G4ParticleDefinition , const G4Material , G4double kineticEnergy)

virtual G4double	GetParticleCharge (const G4ParticleDefinition , const G4Material , G4double kineticEnergy)

virtual void	StartTracking (G4Track *)

virtual void	CorrectionsAlongStep (const G4MaterialCutsCouple , const G4DynamicParticle , const G4double &length, G4double &eloss)

virtual G4double	Value (const G4MaterialCutsCouple , const G4ParticleDefinition , G4double kineticEnergy)

virtual G4double	MinPrimaryEnergy (const G4Material , const G4ParticleDefinition , G4double cut=0.0)

virtual G4double	MinEnergyCut (const G4ParticleDefinition , const G4MaterialCutsCouple )

virtual void	SetupForMaterial (const G4ParticleDefinition , const G4Material , G4double kineticEnergy)

virtual void	DefineForRegion (const G4Region *)

virtual void	FillNumberOfSecondaries (G4int &numberOfTriplets, G4int &numberOfRecoil)

virtual void	ModelDescription (std::ostream &outFile) const

void	InitialiseElementSelectors (const G4ParticleDefinition *, const G4DataVector &)

std::vector< G4EmElementSelector * > *	GetElementSelectors ()

void	SetElementSelectors (std::vector< G4EmElementSelector * > *)

G4double	ComputeDEDX (const G4MaterialCutsCouple , const G4ParticleDefinition , G4double kineticEnergy, G4double cutEnergy=DBL_MAX)

G4double	CrossSection (const G4MaterialCutsCouple , const G4ParticleDefinition , G4double kineticEnergy, G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

G4double	ComputeMeanFreePath (const G4ParticleDefinition , G4double kineticEnergy, const G4Material , G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

G4double	ComputeCrossSectionPerAtom (const G4ParticleDefinition , const G4Element , G4double kinEnergy, G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

const G4Element *	SelectRandomAtom (const G4MaterialCutsCouple , const G4ParticleDefinition , G4double kineticEnergy, G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

const G4Element *	SelectTargetAtom (const G4MaterialCutsCouple , const G4ParticleDefinition , G4double kineticEnergy, G4double logKineticEnergy, G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

const G4Element *	SelectRandomAtom (const G4Material , const G4ParticleDefinition , G4double kineticEnergy, G4double cutEnergy=0.0, G4double maxEnergy=DBL_MAX)

const G4Element *	GetCurrentElement (const G4Material *mat=nullptr) const

G4int	SelectRandomAtomNumber (const G4Material *) const

const G4Isotope *	GetCurrentIsotope (const G4Element *elm=nullptr) const

G4int	SelectIsotopeNumber (const G4Element *) const

void	SetParticleChange (G4VParticleChange , G4VEmFluctuationModel f=nullptr)

void	SetCrossSectionTable (G4PhysicsTable *, G4bool isLocal)

G4ElementData *	GetElementData ()

G4PhysicsTable *	GetCrossSectionTable ()

G4VEmFluctuationModel *	GetModelOfFluctuations ()

G4VEmAngularDistribution *	GetAngularDistribution ()

G4VEmModel *	GetTripletModel ()

void	SetTripletModel (G4VEmModel *)

void	SetAngularDistribution (G4VEmAngularDistribution *)

G4double	HighEnergyLimit () const

G4double	LowEnergyLimit () const

G4double	HighEnergyActivationLimit () const

G4double	LowEnergyActivationLimit () const

G4double	PolarAngleLimit () const

G4double	SecondaryThreshold () const

G4bool	DeexcitationFlag () const

G4bool	ForceBuildTableFlag () const

G4bool	UseAngularGeneratorFlag () const

void	SetAngularGeneratorFlag (G4bool)

void	SetHighEnergyLimit (G4double)

void	SetLowEnergyLimit (G4double)

void	SetActivationHighEnergyLimit (G4double)

void	SetActivationLowEnergyLimit (G4double)

G4bool	IsActive (G4double kinEnergy) const

void	SetPolarAngleLimit (G4double)

void	SetSecondaryThreshold (G4double)

void	SetDeexcitationFlag (G4bool val)

void	SetForceBuildTable (G4bool val)

void	SetFluctuationFlag (G4bool val)

void	SetMasterThread (G4bool val)

G4bool	IsMaster () const

void	SetUseBaseMaterials (G4bool val)

G4bool	UseBaseMaterials () const

G4double	MaxSecondaryKinEnergy (const G4DynamicParticle *dynParticle)

const G4String &	GetName () const

void	SetCurrentCouple (const G4MaterialCutsCouple *)

G4bool	IsLocked () const

void	SetLocked (G4bool)

void	SetLPMFlag (G4bool)

G4VEmModel &	operator= (const G4VEmModel &right)=delete

	G4VEmModel (const G4VEmModel &)=delete

Protected Attributes
G4ParticleChangeForGamma *	fParticleChangeForGamma

Protected Attributes inherited from G4VEmModel
G4ElementData *	fElementData = nullptr

G4VParticleChange *	pParticleChange = nullptr

G4PhysicsTable *	xSectionTable = nullptr

const G4Material *	pBaseMaterial = nullptr

const std::vector< G4double > *	theDensityFactor = nullptr

const std::vector< G4int > *	theDensityIdx = nullptr

G4double	inveplus

G4double	pFactor = 1.0

std::size_t	currentCoupleIndex = 0

std::size_t	basedCoupleIndex = 0

G4bool	lossFlucFlag = true

Additional Inherited Members
Protected Member Functions inherited from G4VEmModel
G4ParticleChangeForLoss *	GetParticleChangeForLoss ()

G4ParticleChangeForGamma *	GetParticleChangeForGamma ()

virtual G4double	MaxSecondaryEnergy (const G4ParticleDefinition *, G4double kineticEnergy)

const G4MaterialCutsCouple *	CurrentCouple () const

void	SetCurrentElement (const G4Element *)

Detailed Description

Definition at line 47 of file G4DNABornIonisationModel2.hh.

Constructor & Destructor Documentation

◆ G4DNABornIonisationModel2() [1/2]

G4DNABornIonisationModel2::G4DNABornIonisationModel2	(	const G4ParticleDefinition *	p = nullptr,
		const G4String &	nam = "DNABornIonisationModel" )

Definition at line 45 of file G4DNABornIonisationModel2.cc.

                                                                          :
G4VEmModel(nam) 
{
  verboseLevel = 0;
  // Verbosity scale:
  // 0 = nothing
  // 1 = warning for energy non-conservation
  // 2 = details of energy budget
  // 3 = calculation of cross sections, file openings, sampling of atoms
  // 4 = entering in methods
 
  if (verboseLevel > 0)
  {
    G4cout << "Born ionisation model is constructed " << G4endl;
  }
 
  // Mark this model as "applicable" for atomic deexcitation
  
  SetDeexcitationFlag(true);
  fAtomDeexcitation = nullptr;
  fParticleChangeForGamma = nullptr;
  fpMolWaterDensity = nullptr;
  fTableData = nullptr;
  fLowEnergyLimit = 0;
  fHighEnergyLimit = 0;
  fParticleDef = nullptr;
 
  // Define default angular generator
  
  SetAngularDistribution(new G4DNABornAngle());
 
  // Selection of computation method
 
  fasterCode = false;
 
  // Selection of stationary mode
 
  statCode = false;
 
  // Selection of SP scaling
 
  spScaling = true;
}

◆ ~G4DNABornIonisationModel2()

G4DNABornIonisationModel2::~G4DNABornIonisationModel2 ( )

override

Definition at line 92 of file G4DNABornIonisationModel2.cc.

{
  // Cross section
 
  
    delete fTableData;
 
  // Final state
 
  fVecm.clear();
}

◆ G4DNABornIonisationModel2() [2/2]

G4DNABornIonisationModel2::G4DNABornIonisationModel2 ( const G4DNABornIonisationModel2 & )

delete

Member Function Documentation

◆ CrossSectionPerVolume()

G4double G4DNABornIonisationModel2::CrossSectionPerVolume	(	const G4Material *	material,
		const G4ParticleDefinition *	p,
		G4double	ekin,
		G4double	emin,
		G4double	emax )

overridevirtual

Reimplemented from G4VEmModel.

Definition at line 263 of file G4DNABornIonisationModel2.cc.

{
  if (verboseLevel > 3)
  {
    G4cout << "Calling CrossSectionPerVolume() of G4DNABornIonisationModel2"
        << G4endl;
  }
 
  if (particleDefinition != fParticleDef) return 0;
 
  // Calculate total cross section for model
 
  G4double sigma=0;
 
  G4double waterDensity = (*fpMolWaterDensity)[material->GetIndex()];
 
  if (ekin >= fLowEnergyLimit && ekin <= fHighEnergyLimit)
  {
    sigma = fTableData->FindValue(ekin);
          
    // ICRU49 electronic SP scaling - ZF, SI
 
    if (particleDefinition == G4Proton::ProtonDefinition() && ekin < 70*MeV && spScaling)
    {
      G4double A = 1.39241700556072800000E-009 ;
      G4double B = -8.52610412942622630000E-002 ;
      sigma = sigma * G4Exp(A*(ekin/eV)+B);
    }
    //
  }
 
  if (verboseLevel > 2)
  {
    G4cout << "__________________________________" << G4endl;
    G4cout << "G4DNABornIonisationModel2 - XS INFO START" << G4endl;
    G4cout << "Kinetic energy(eV)=" << ekin/eV << " particle : " << particleDefinition->GetParticleName() << G4endl;
    G4cout << "Cross section per water molecule (cm^2)=" << sigma/cm/cm << G4endl;
    G4cout << "Cross section per water molecule (cm^-1)=" << sigma*waterDensity/(1./cm) << G4endl;
    G4cout << "G4DNABornIonisationModel2 - XS INFO END" << G4endl;
  }
 
  return sigma*waterDensity;
}

◆ DifferentialCrossSection()

G4double G4DNABornIonisationModel2::DifferentialCrossSection	(	G4ParticleDefinition *	aParticleDefinition,
		G4double	k,
		G4double	energyTransfer,
		G4int	shell )

Definition at line 615 of file G4DNABornIonisationModel2.cc.

{
  G4double sigma = 0.;
 
  if (energyTransfer >= waterStructure.IonisationEnergy(ionizationLevelIndex)/eV)
  {
    G4double valueT1 = 0;
    G4double valueT2 = 0;
    G4double valueE21 = 0;
    G4double valueE22 = 0;
    G4double valueE12 = 0;
    G4double valueE11 = 0;
 
    G4double xs11 = 0;
    G4double xs12 = 0;
    G4double xs21 = 0;
    G4double xs22 = 0;
 
    // Protection against out of boundary access - proton case : 100 MeV
    if (k==fTdummyVec.back()) k=k*(1.-1e-12);
    //
 
    // k should be in eV and energy transfer eV also
 
    auto t2 = std::upper_bound(fTdummyVec.begin(),
                                                        fTdummyVec.end(),
                                                        k);
 
    auto t1 = t2 - 1;
 
    // SI : the following condition avoids situations where energyTransfer >last vector element
    
    if (energyTransfer <= fVecm[(*t1)].back()
        && energyTransfer <= fVecm[(*t2)].back())
    {
      auto e12 = std::upper_bound(fVecm[(*t1)].begin(),
                                                           fVecm[(*t1)].end(),
                                                           energyTransfer);
      auto e11 = e12 - 1;
 
      auto e22 = std::upper_bound(fVecm[(*t2)].begin(),
                                                           fVecm[(*t2)].end(),
                                                           energyTransfer);
      auto e21 = e22 - 1;
 
      valueT1 = *t1;
      valueT2 = *t2;
      valueE21 = *e21;
      valueE22 = *e22;
      valueE12 = *e12;
      valueE11 = *e11;
 
      xs11 = fDiffCrossSectionData[ionizationLevelIndex][valueT1][valueE11];
      xs12 = fDiffCrossSectionData[ionizationLevelIndex][valueT1][valueE12];
      xs21 = fDiffCrossSectionData[ionizationLevelIndex][valueT2][valueE21];
      xs22 = fDiffCrossSectionData[ionizationLevelIndex][valueT2][valueE22];
 
    }
 
    G4double xsProduct = xs11 * xs12 * xs21 * xs22;
    if (xsProduct != 0.)
    {
      sigma = QuadInterpolator(valueE11,
                               valueE12,
                               valueE21,
                               valueE22,
                               xs11,
                               xs12,
                               xs21,
                               xs22,
                               valueT1,
                               valueT2,
                               k,
                               energyTransfer);
    }
  }
 
  return sigma;
}

◆ GetPartialCrossSection()

G4double G4DNABornIonisationModel2::GetPartialCrossSection	(	const G4Material *	,
		G4int	level,
		const G4ParticleDefinition *	,
		G4double	kineticEnergy )

overridevirtual

Reimplemented from G4VEmModel.

Definition at line 790 of file G4DNABornIonisationModel2.cc.

{
  return fTableData->GetComponent(level)->FindValue(kineticEnergy);
}

◆ Initialise()

void G4DNABornIonisationModel2::Initialise	(	const G4ParticleDefinition *	particle,
		const G4DataVector &	= *(new G4DataVector()) )

overridevirtual

Implements G4VEmModel.

Definition at line 106 of file G4DNABornIonisationModel2.cc.

{
 
  if (verboseLevel > 3)
  {
    G4cout << "Calling G4DNABornIonisationModel2::Initialise()" << G4endl;
  }
 
  if(fParticleDef != nullptr && particle != fParticleDef)
  {
    G4ExceptionDescription description;
    description << "You are trying to initialized G4DNABornIonisationModel2 "
    "for particle "
    << particle->GetParticleName()
    << G4endl;
    description << "G4DNABornIonisationModel2 was already initialised "
    "for particle:" << fParticleDef->GetParticleName() << G4endl;
    G4Exception("G4DNABornIonisationModel2::Initialise","bornIonInit",
        FatalException,description);
  }
 
  fParticleDef = particle;
 
  // Energy limits
  const char* path = G4FindDataDir("G4LEDATA");
 
  // ***
 
  G4String particleName = particle->GetParticleName();
  std::ostringstream fullFileName;
  fullFileName << path;
 
  if(particleName == "e-")
  {
    fTableFile = "dna/sigma_ionisation_e_born";
    fLowEnergyLimit = 11.*eV;
    fHighEnergyLimit = 1.*MeV;
 
    if (fasterCode)
    {
      fullFileName << "/dna/sigmadiff_cumulated_ionisation_e_born_hp.dat";
    }
    else
    {
      fullFileName << "/dna/sigmadiff_ionisation_e_born.dat";
    }
  }
  else if(particleName == "proton")
  {
    fTableFile = "dna/sigma_ionisation_p_born";
    fLowEnergyLimit = 500. * keV;
    fHighEnergyLimit = 100. * MeV;
 
    if (fasterCode)
    {
      fullFileName << "/dna/sigmadiff_cumulated_ionisation_p_born_hp.dat";
    }
    else
    {
      fullFileName << "/dna/sigmadiff_ionisation_p_born.dat";
    }
  }
 
  // Cross section
  
  G4double scaleFactor = (1.e-22 / 3.343) * m*m;
  fTableData = new G4DNACrossSectionDataSet(new G4LogLogInterpolation, eV,scaleFactor );
  fTableData->LoadData(fTableFile);
 
  // Final state
 
  std::ifstream diffCrossSection(fullFileName.str().c_str());
 
  if (!diffCrossSection)
  {
    G4ExceptionDescription description;
    description << "Missing data file:" << G4endl << fullFileName.str() << G4endl;
    G4Exception("G4DNABornIonisationModel2::Initialise","em0003",
        FatalException,description);
  }
 
  // Clear the arrays for re-initialization case (MT mode)
  // March 25th, 2014 - Vaclav Stepan, Sebastien Incerti
 
  fTdummyVec.clear();
  fVecm.clear();
 
  for (int j=0; j<5; j++)
  {
    fProbaShellMap[j].clear();
    fDiffCrossSectionData[j].clear();
    fNrjTransfData[j].clear();
  }
  
  //
 
  fTdummyVec.push_back(0.);
  while(!diffCrossSection.eof())
  {
    G4double tDummy;
    G4double eDummy;
    diffCrossSection>>tDummy>>eDummy;
    if (tDummy != fTdummyVec.back()) fTdummyVec.push_back(tDummy);
 
    G4double tmp;
    for (int j=0; j<5; j++)
    {
      diffCrossSection>> tmp;
 
      fDiffCrossSectionData[j][tDummy][eDummy] = tmp;
 
      if (fasterCode)
      {
        fNrjTransfData[j][tDummy][fDiffCrossSectionData[j][tDummy][eDummy]]=eDummy;
        fProbaShellMap[j][tDummy].push_back(fDiffCrossSectionData[j][tDummy][eDummy]);
      }
 
      // SI - only if eof is not reached
      if (!diffCrossSection.eof() && !fasterCode) fDiffCrossSectionData[j][tDummy][eDummy]*=scaleFactor;
 
      if (!fasterCode) fVecm[tDummy].push_back(eDummy);
 
    }
  }
 
  //
  SetLowEnergyLimit(fLowEnergyLimit);
  SetHighEnergyLimit(fHighEnergyLimit);
 
  if( verboseLevel>0 )
  {
    G4cout << "Born ionisation model is initialized " << G4endl
    << "Energy range: "
    << LowEnergyLimit() / eV << " eV - "
    << HighEnergyLimit() / keV << " keV for "
    << particle->GetParticleName()
    << G4endl;
  }
 
  // Initialize water density pointer
  
  fpMolWaterDensity = G4DNAMolecularMaterial::Instance()->
  GetNumMolPerVolTableFor(G4Material::GetMaterial("G4_WATER"));
 
  // AD
  
  fAtomDeexcitation = G4LossTableManager::Instance()->AtomDeexcitation();
 
  if (isInitialised)
  { return;}
  fParticleChangeForGamma = GetParticleChangeForGamma();
  isInitialised = true;
}

◆ operator=()

G4DNABornIonisationModel2 & G4DNABornIonisationModel2::operator= ( const G4DNABornIonisationModel2 & right )

delete

◆ SampleSecondaries()

void G4DNABornIonisationModel2::SampleSecondaries	(	std::vector< G4DynamicParticle * > *	fvect,
		const G4MaterialCutsCouple *	couple,
		const G4DynamicParticle *	particle,
		G4double	tmin,
		G4double	maxEnergy )

overridevirtual

Implements G4VEmModel.

Definition at line 313 of file G4DNABornIonisationModel2.cc.

{
 
  if (verboseLevel > 3)
  {
    G4cout << "Calling SampleSecondaries() of G4DNABornIonisationModel2"
        << G4endl;
  }
 
  G4double k = particle->GetKineticEnergy();
 
  if (k >= fLowEnergyLimit && k <= fHighEnergyLimit)
  {
    G4ParticleMomentum primaryDirection = particle->GetMomentumDirection();
    G4double particleMass = particle->GetDefinition()->GetPDGMass();
    G4double totalEnergy = k + particleMass;
    G4double pSquare = k * (totalEnergy + particleMass);
    G4double totalMomentum = std::sqrt(pSquare);
 
    G4int ionizationShell = 0;
 
    if (!fasterCode) ionizationShell = RandomSelect(k);
 
    // SI: The following protection is necessary to avoid infinite loops :
    //  sigmadiff_ionisation_e_born.dat has non zero partial xs at 18 eV for shell 3 (ionizationShell ==2)
    //  sigmadiff_cumulated_ionisation_e_born.dat has zero cumulated partial xs at 18 eV for shell 3 (ionizationShell ==2)
    //  this is due to the fact that the max allowed transfered energy is (18+10.79)/2=17.025 eV and only transfered energies
    //  strictly above this value have non zero partial xs in sigmadiff_ionisation_e_born.dat (starting at trans = 17.12 eV)
 
    if (fasterCode)
    do
    {
      ionizationShell = RandomSelect(k);
    } while (k<19*eV && ionizationShell==2 && particle->GetDefinition()==G4Electron::ElectronDefinition());
 
    G4double secondaryKinetic=-1000*eV;
 
    if (!fasterCode)
    {
      secondaryKinetic = RandomizeEjectedElectronEnergy(particle->GetDefinition(),k,ionizationShell);
    }
    else
    {
      secondaryKinetic = RandomizeEjectedElectronEnergyFromCumulatedDcs(particle->GetDefinition(),k,ionizationShell);
    }
 
    G4int Z = 8;
 
    G4ThreeVector deltaDirection =
    GetAngularDistribution()->SampleDirectionForShell(particle, secondaryKinetic,
        Z, ionizationShell,
        couple->GetMaterial());
 
    if (secondaryKinetic>0)
    {
      auto  dp = new G4DynamicParticle (G4Electron::Electron(),deltaDirection,secondaryKinetic);
      fvect->push_back(dp);
    }
 
    if (particle->GetDefinition() == G4Electron::ElectronDefinition())
    {
      G4double deltaTotalMomentum = std::sqrt(secondaryKinetic*(secondaryKinetic + 2.*electron_mass_c2 ));
 
      G4double finalPx = totalMomentum*primaryDirection.x() - deltaTotalMomentum*deltaDirection.x();
      G4double finalPy = totalMomentum*primaryDirection.y() - deltaTotalMomentum*deltaDirection.y();
      G4double finalPz = totalMomentum*primaryDirection.z() - deltaTotalMomentum*deltaDirection.z();
      G4double finalMomentum = std::sqrt(finalPx*finalPx + finalPy*finalPy + finalPz*finalPz);
      finalPx /= finalMomentum;
      finalPy /= finalMomentum;
      finalPz /= finalMomentum;
 
      G4ThreeVector direction;
      direction.set(finalPx,finalPy,finalPz);
 
      fParticleChangeForGamma->ProposeMomentumDirection(direction.unit());
    }
 
    else fParticleChangeForGamma->ProposeMomentumDirection(primaryDirection);
 
    // AM: sample deexcitation
    // here we assume that H_{2}O electronic levels are the same as Oxygen.
    // this can be considered true with a rough 10% error in energy on K-shell,
 
    std::size_t secNumberInit = 0;
    std::size_t secNumberFinal = 0;
 
    G4double bindingEnergy = 0;
    bindingEnergy = waterStructure.IonisationEnergy(ionizationShell);
 
    // SI: additional protection if tcs interpolation method is modified
    if (k<bindingEnergy) return;
    //
 
    G4double scatteredEnergy = k-bindingEnergy-secondaryKinetic;
 
    // SI: only atomic deexcitation from K shell is considered
    if((fAtomDeexcitation != nullptr) && ionizationShell == 4)
    {
      const G4AtomicShell* shell = 
        fAtomDeexcitation->GetAtomicShell(Z, G4AtomicShellEnumerator(0));
      secNumberInit = fvect->size();
      fAtomDeexcitation->GenerateParticles(fvect, shell, Z, 0, 0);
      secNumberFinal = fvect->size();
 
      if(secNumberFinal > secNumberInit) 
      {
    for (std::size_t i=secNumberInit; i<secNumberFinal; ++i)
        {
          //Check if there is enough residual energy 
          if (bindingEnergy >= ((*fvect)[i])->GetKineticEnergy())
          {
             //Ok, this is a valid secondary: keep it
         bindingEnergy -= ((*fvect)[i])->GetKineticEnergy();
          }
          else
          {
         //Invalid secondary: not enough energy to create it!
         //Keep its energy in the local deposit
             delete (*fvect)[i]; 
             (*fvect)[i]=nullptr;
          }
    } 
      }
 
    }
 
    //This should never happen
    if(bindingEnergy < 0.0) 
     G4Exception("G4DNAEmfietzoglouIonisatioModel1::SampleSecondaries()",
                 "em2050",FatalException,"Negative local energy deposit");   
 
    //bindingEnergy has been decreased 
    //by the amount of energy taken away by deexc. products
    if (!statCode)
    {
      fParticleChangeForGamma->SetProposedKineticEnergy(scatteredEnergy);
      fParticleChangeForGamma->ProposeLocalEnergyDeposit(bindingEnergy);
    }
    else
    {
      fParticleChangeForGamma->SetProposedKineticEnergy(k);
      fParticleChangeForGamma->ProposeLocalEnergyDeposit(k-scatteredEnergy);
    }
 
    // TEST //////////////////////////
    // if (secondaryKinetic<0) abort();
    // if (scatteredEnergy<0) abort();
    // if (k-scatteredEnergy-secondaryKinetic-deexSecEnergy<0) abort();
    // if (k-scatteredEnergy<0) abort();
    /////////////////////////////////
 
    const G4Track * theIncomingTrack = fParticleChangeForGamma->GetCurrentTrack();
    G4DNAChemistryManager::Instance()->CreateWaterMolecule(eIonizedMolecule,
        ionizationShell,
        theIncomingTrack);
  }
}

◆ SelectFasterComputation()

void G4DNABornIonisationModel2::SelectFasterComputation ( G4bool input )

inline

Definition at line 160 of file G4DNABornIonisationModel2.hh.

{ 
    fasterCode = input; 
}        

◆ SelectSPScaling()

void G4DNABornIonisationModel2::SelectSPScaling ( G4bool input )

inline

Definition at line 174 of file G4DNABornIonisationModel2.hh.

{ 
    spScaling = input; 
}        

◆ SelectStationary()

void G4DNABornIonisationModel2::SelectStationary ( G4bool input )

inline

Definition at line 167 of file G4DNABornIonisationModel2.hh.

{ 
    statCode = input; 
}        

◆ TransferedEnergy()

G4double G4DNABornIonisationModel2::TransferedEnergy	(	G4ParticleDefinition *	aParticleDefinition,
		G4double	incomingParticleEnergy,
		G4int	shell,
		G4double	random )

Definition at line 866 of file G4DNABornIonisationModel2.cc.

{
 
  G4double nrj = 0.;
 
  G4double valueK1 = 0;
  G4double valueK2 = 0;
  G4double valuePROB21 = 0;
  G4double valuePROB22 = 0;
  G4double valuePROB12 = 0;
  G4double valuePROB11 = 0;
 
  G4double nrjTransf11 = 0;
  G4double nrjTransf12 = 0;
  G4double nrjTransf21 = 0;
  G4double nrjTransf22 = 0;
 
  // Protection against out of boundary access - proton case : 100 MeV
  if (k==fTdummyVec.back()) k=k*(1.-1e-12);
  //
 
  // k should be in eV
  auto k2 = std::upper_bound(fTdummyVec.begin(),
                                                      fTdummyVec.end(),
                                                      k);
  auto k1 = k2 - 1;
 
  /*
   G4cout << "----> k=" << k
   << " " << *k1
   << " " << *k2
   << " " << random
   << " " << ionizationLevelIndex
   << " " << eProbaShellMap[ionizationLevelIndex][(*k1)].back()
   << " " << eProbaShellMap[ionizationLevelIndex][(*k2)].back()
   << G4endl;
  */
 
  // SI : the following condition avoids situations where random >last vector element
  if (random <= fProbaShellMap[ionizationLevelIndex][(*k1)].back()
      && random <= fProbaShellMap[ionizationLevelIndex][(*k2)].back())
  {
    auto prob12 =
        std::upper_bound(fProbaShellMap[ionizationLevelIndex][(*k1)].begin(),
                         fProbaShellMap[ionizationLevelIndex][(*k1)].end(),
                         random);
 
    auto prob11 = prob12 - 1;
 
    auto prob22 =
        std::upper_bound(fProbaShellMap[ionizationLevelIndex][(*k2)].begin(),
                         fProbaShellMap[ionizationLevelIndex][(*k2)].end(),
                         random);
 
    auto prob21 = prob22 - 1;
 
    valueK1 = *k1;
    valueK2 = *k2;
    valuePROB21 = *prob21;
    valuePROB22 = *prob22;
    valuePROB12 = *prob12;
    valuePROB11 = *prob11;
 
    /*
     G4cout << "        " << random << " " << valuePROB11 << " "
     << valuePROB12 << " " << valuePROB21 << " " << valuePROB22 << G4endl;
    */
 
    nrjTransf11 = fNrjTransfData[ionizationLevelIndex][valueK1][valuePROB11];
    nrjTransf12 = fNrjTransfData[ionizationLevelIndex][valueK1][valuePROB12];
    nrjTransf21 = fNrjTransfData[ionizationLevelIndex][valueK2][valuePROB21];
    nrjTransf22 = fNrjTransfData[ionizationLevelIndex][valueK2][valuePROB22];
 
    /*
     G4cout << "        " << ionizationLevelIndex << " "
     << random << " " <<valueK1 << " " << valueK2 << G4endl;
 
     G4cout << "        " << random << " " << nrjTransf11 << " "
     << nrjTransf12 << " " << nrjTransf21 << " " <<nrjTransf22 << G4endl;
    */
 
  }
  // Avoids cases where cum xs is zero for k1 and is not for k2 (with always k1<k2)
  if (random > fProbaShellMap[ionizationLevelIndex][(*k1)].back())
  {
    auto prob22 =
        std::upper_bound(fProbaShellMap[ionizationLevelIndex][(*k2)].begin(),
                         fProbaShellMap[ionizationLevelIndex][(*k2)].end(),
                         random);
 
    auto prob21 = prob22 - 1;
 
    valueK1 = *k1;
    valueK2 = *k2;
    valuePROB21 = *prob21;
    valuePROB22 = *prob22;
 
    // G4cout << "        " << random << " " << valuePROB21 << " " << valuePROB22 << G4endl;
 
    nrjTransf21 = fNrjTransfData[ionizationLevelIndex][valueK2][valuePROB21];
    nrjTransf22 = fNrjTransfData[ionizationLevelIndex][valueK2][valuePROB22];
 
    G4double interpolatedvalue2 = Interpolate(valuePROB21,
                                              valuePROB22,
                                              random,
                                              nrjTransf21,
                                              nrjTransf22);
 
    // zeros are explicitly set
 
    G4double value = Interpolate(valueK1, valueK2, k, 0., interpolatedvalue2);
 
    /*
     G4cout << "        " << ionizationLevelIndex << " "
     << random << " " <<valueK1 << " " << valueK2 << G4endl;
 
     G4cout << "        " << random << " " << nrjTransf11 << " "
     << nrjTransf12 << " " << nrjTransf21 << " " <<nrjTransf22 << G4endl;
 
     G4cout << "ici" << " " << value << G4endl;
    */
 
    return value;
  }
 
  // End electron and proton cases
 
  G4double nrjTransfProduct = nrjTransf11 * nrjTransf12 * nrjTransf21
      * nrjTransf22;
  //G4cout << "nrjTransfProduct=" << nrjTransfProduct << G4endl;
 
  if (nrjTransfProduct != 0.)
  {
    nrj = QuadInterpolator(valuePROB11,
                           valuePROB12,
                           valuePROB21,
                           valuePROB22,
                           nrjTransf11,
                           nrjTransf12,
                           nrjTransf21,
                           nrjTransf22,
                           valueK1,
                           valueK2,
                           k,
                           random);
  }
  // G4cout << nrj << endl;
 
  return nrj;
}

Member Data Documentation

◆ fParticleChangeForGamma

G4ParticleChangeForGamma* G4DNABornIonisationModel2::fParticleChangeForGamma

protected

Definition at line 91 of file G4DNABornIonisationModel2.hh.

Referenced by G4DNABornIonisationModel2(), Initialise(), and SampleSecondaries().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ G4DNABornIonisationModel2() [1/2]

◆ ~G4DNABornIonisationModel2()

◆ G4DNABornIonisationModel2() [2/2]

Member Function Documentation

◆ CrossSectionPerVolume()

◆ DifferentialCrossSection()

◆ GetPartialCrossSection()

◆ Initialise()

◆ operator=()

◆ SampleSecondaries()

◆ SelectFasterComputation()

◆ SelectSPScaling()

◆ SelectStationary()

◆ TransferedEnergy()

Member Data Documentation

◆ fParticleChangeForGamma