G4DNAMolecularDecayDisplacer.cc

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// $Id: G4DNAMolecularDecayDisplacer.cc 65022 2012-11-12 16:43:12Z gcosmo $
//
// Author: Mathieu Karamitros (kara (AT) cenbg . in2p3 . fr) 
//
// WARNING : This class is released as a prototype.
// It might strongly evolve or even disapear in the next releases.
//
// History:
// -----------
// 10 Oct 2011 M.Karamitros created
//
// -------------------------------------------------------------------
 
#include "G4DNAMolecularDecayDisplacer.hh"
#include "G4PhysicalConstants.hh"
#include "G4SystemOfUnits.hh"
#include "G4H2O.hh"
#include "G4H2.hh"
#include "G4Hydrogen.hh"
#include "G4OH.hh"
#include "G4H3O.hh"
#include "G4Electron_aq.hh"
#include "G4H2O2.hh"
#include "Randomize.hh"
#include "G4Molecule.hh"
 
using namespace std;
 
const DisplacementType G4DNAMolecularDecayDisplacer::Ionisation_DissociationDecay = G4VMolecularDecayDisplacer::AddDisplacement();
const DisplacementType G4DNAMolecularDecayDisplacer::A1B1_DissociationDecay = G4VMolecularDecayDisplacer::AddDisplacement();
const DisplacementType G4DNAMolecularDecayDisplacer::B1A1_DissociationDecay = G4VMolecularDecayDisplacer::AddDisplacement();
const DisplacementType G4DNAMolecularDecayDisplacer::AutoIonisation = G4VMolecularDecayDisplacer::AddDisplacement();
const DisplacementType G4DNAMolecularDecayDisplacer::DissociativeAttachment = G4VMolecularDecayDisplacer::AddDisplacement();
 
G4DNAMolecularDecayDisplacer::G4DNAMolecularDecayDisplacer() :
    G4VMolecularDecayDisplacer()
{;}
 
G4DNAMolecularDecayDisplacer::~G4DNAMolecularDecayDisplacer()
{;}
 
G4ThreeVector G4DNAMolecularDecayDisplacer::GetMotherMoleculeDisplacement(const G4MolecularDecayChannel* theDecayChannel) const
{
    G4int decayType = theDecayChannel -> GetDisplacementType();
 
    G4double RMSMotherMoleculeDisplacement=0;
 
    if(decayType == Ionisation_DissociationDecay)
    {
        RMSMotherMoleculeDisplacement =  2.0 * nanometer ;
    }
    else if(decayType == A1B1_DissociationDecay)
    {
        RMSMotherMoleculeDisplacement = 0. * nanometer ;
    }
    else if(decayType == B1A1_DissociationDecay)
    {
        RMSMotherMoleculeDisplacement = 0. * nanometer ;
    }
    else if(decayType == AutoIonisation)
    {
        RMSMotherMoleculeDisplacement = 2.0 * nanometer ;
    }
    else if(decayType == DissociativeAttachment)
    {
        RMSMotherMoleculeDisplacement = 0. * nanometer ;
    }
 
    if(RMSMotherMoleculeDisplacement==0)
    {
        return G4ThreeVector(0,0,0);
    }
    G4ThreeVector RandDirection = radialDistributionOfProducts(RMSMotherMoleculeDisplacement);
 
    return RandDirection;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
vector<G4ThreeVector> G4DNAMolecularDecayDisplacer::GetProductsDisplacement(const G4MolecularDecayChannel* theDecayChannel) const
{
    G4int nbProducts = theDecayChannel -> GetNbProducts();
    vector<G4ThreeVector> theProductDisplacementVector (nbProducts);
 
    typedef map<const G4MoleculeDefinition*,G4double> RMSmap ;
    RMSmap theRMSmap;
 
    G4int decayType = theDecayChannel -> GetDisplacementType();
 
    if(decayType == Ionisation_DissociationDecay)
    {
        if(fVerbose)
            G4cout<<"Ionisation_DissociationDecay"<<G4endl;
        G4double RdmValue = G4UniformRand();
 
        if(RdmValue< 0.5)
        {
            // H3O
            theRMSmap[G4H3O::Definition()] = 0.* nanometer;
            // OH
            theRMSmap[G4OH::Definition()] = 0.8* nanometer;
        }
        else
        {
            // H3O
            theRMSmap[G4H3O::Definition()] = 0.8* nanometer;
            // OH
            theRMSmap[G4OH::Definition()] = 0.* nanometer;
        }
 
        for(int i = 0; i < nbProducts ; i++)
        {
            G4double theRMSDisplacement;
            const G4Molecule* product = theDecayChannel->GetProduct(i);
            theRMSDisplacement = theRMSmap[product->GetDefinition()];
 
            if(theRMSDisplacement==0)
            {
                theProductDisplacementVector[i] = G4ThreeVector();
            }
            else
            {
                G4ThreeVector RandDirection = radialDistributionOfProducts(theRMSDisplacement);
                theProductDisplacementVector[i] = RandDirection;
            }
        }
    }
    else if(decayType == A1B1_DissociationDecay)
    {
        if(fVerbose)
            G4cout<<"A1B1_DissociationDecay"<<G4endl;
        G4double theRMSDisplacement = 2.4 * nanometer;
        G4ThreeVector RandDirection = radialDistributionOfProducts(theRMSDisplacement);
 
        for(G4int i =0 ; i < nbProducts ; i++)
        {
            const G4Molecule* product = theDecayChannel->GetProduct(i);
            if(product->GetDefinition()== G4OH::Definition())
            {
                theProductDisplacementVector[i] = -1./18.*RandDirection;
            }
            else if(product->GetDefinition() == G4Hydrogen::Definition())
            {
                theProductDisplacementVector[i] = +17./18.*RandDirection;
            }
        }
    }
    else if(decayType == B1A1_DissociationDecay)
    {
        if(fVerbose)
            G4cout<<"B1A1_DissociationDecay"<<G4endl;
        G4double theRMSDisplacement = 0.8 * nanometer;
        G4ThreeVector RandDirection = radialDistributionOfProducts(theRMSDisplacement);
 
        G4int NbOfOH = 0;
        for(G4int i =0 ; i < nbProducts ; i++)
        {
            const G4Molecule* product = theDecayChannel->GetProduct(i);
            if(product->GetDefinition() == G4H2::Definition())
            {
                theProductDisplacementVector[i] = -2./18.*RandDirection;
            }
            else if(product->GetDefinition() == G4OH::Definition())
            {
                G4ThreeVector OxygenDisplacement = +16./18.*RandDirection;
                G4double OHRMSDisplacement = 1.1 * nanometer;
 
                G4ThreeVector OHDisplacement = radialDistributionOfProducts(OHRMSDisplacement) ;
 
                if(NbOfOH==0)
                {
                    OHDisplacement = 1./2.*OHDisplacement;
                }
                else
                {
                    OHDisplacement = -1./2.*OHDisplacement;
                }
 
                theProductDisplacementVector[i]  = OHDisplacement + OxygenDisplacement;
 
                NbOfOH ++;
            }
        }
    }
    else if(decayType == AutoIonisation)
    {
        if(fVerbose)
            G4cout<<"AutoIonisation"<<G4endl;
        G4double RdmValue = G4UniformRand();
 
        if(RdmValue< 0.5)
        {
            // H3O
            theRMSmap[G4H3O::Definition()] = 0.* nanometer;
            // OH
            theRMSmap[G4OH::Definition()] = 0.8* nanometer;
        }
        else
        {
            // H3O
            theRMSmap[G4H3O::Definition()] = 0.8* nanometer;
            // OH
            theRMSmap[G4OH::Definition()] = 0.* nanometer;
        }
 
        for(G4int i =0 ; i < nbProducts ; i++)
        {
            G4double theRMSDisplacement;
            const G4Molecule* product = theDecayChannel->GetProduct(i);
            theRMSDisplacement = theRMSmap[product->GetDefinition()];
 
            if(theRMSDisplacement==0)
            {
                theProductDisplacementVector[i] = G4ThreeVector();
            }
            else
            {
                G4ThreeVector RandDirection = radialDistributionOfProducts(theRMSDisplacement);
                theProductDisplacementVector[i] = RandDirection;
            }
            if(product->GetDefinition() == G4Electron_aq::Definition())
            {
                theProductDisplacementVector[i]=radialDistributionOfElectron();
            }
        }
    }
    else if(decayType == DissociativeAttachment)
    {
        if(fVerbose)
            G4cout<<"DissociativeAttachment"<<G4endl;
        G4double theRMSDisplacement = 0.8 * nanometer;
        G4ThreeVector RandDirection = radialDistributionOfProducts(theRMSDisplacement);
 
        G4int NbOfOH = 0;
        for(G4int i =0 ; i < nbProducts ; i++)
        {
            const G4Molecule* product = theDecayChannel->GetProduct(i);
            if(product->GetDefinition() == G4H2::Definition())
            {
                theProductDisplacementVector[i] = -2./18.*RandDirection;
            }
            else if(product->GetDefinition() == G4OH::Definition())
            {
                G4ThreeVector OxygenDisplacement = +16./18.*RandDirection;
                G4double OHRMSDisplacement = 1.1 * nanometer;
 
                G4ThreeVector OHDisplacement = radialDistributionOfProducts(OHRMSDisplacement) ;
 
                if(NbOfOH==0)
                {
                    OHDisplacement = 1./2.*OHDisplacement;
                }
                else
                {
                    OHDisplacement = -1./2.*OHDisplacement;
                }
 
                theProductDisplacementVector[i]  = OHDisplacement + OxygenDisplacement;
 
                NbOfOH ++;
            }
        }
    }
 
    return theProductDisplacementVector;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4ThreeVector G4DNAMolecularDecayDisplacer::radialDistributionOfProducts(G4double Rrms) const
{
    G4double sigma = Rrms/sqrt(3.);
    G4double expectationValue = 2.*sqrt(2./3.14)*sigma;
 
    G4double XValueForfMax = sqrt(2.*sigma*sigma);
    G4double fMaxValue = sqrt(2./3.14) * 1./(sigma*sigma*sigma) *
            (XValueForfMax*XValueForfMax)*
            exp(-1./2. * (XValueForfMax*XValueForfMax)/(sigma*sigma));
 
    G4double R(-1.);
 
    do
    {
        G4double aRandomfValue = fMaxValue*G4UniformRand();
 
        G4double sign;
        if(G4UniformRand() > 0.5)
        {
            sign = +1.;
        }
        else
        {
            sign = -1;
        }
 
        R = expectationValue + sign*3.*sigma* G4UniformRand();
        G4double f = sqrt(2./3.14) * 1/pow(sigma, 3) * R*R * exp(-1./2. * R*R/(sigma*sigma));
 
        if(aRandomfValue < f)
        {
            break;
        }
    }
    while(1);
 
    G4double costheta = (2.*G4UniformRand()-1.);
    G4double theta = acos (costheta);
    G4double phi = 2.*pi*G4UniformRand();
 
    G4double xDirection = R*cos(phi)* sin(theta);
    G4double yDirection = R*sin(theta)*sin(phi);
    G4double zDirection = R*costheta;
    G4ThreeVector RandDirection(xDirection, yDirection, zDirection);
 
    return RandDirection;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4ThreeVector G4DNAMolecularDecayDisplacer::radialDistributionOfElectron() const
{
 
    G4double sigma = 1./2.;
    G4double expectationValue = 1. ;
 
    G4double XValueForfMax = 1./2.;
    G4double fMaxValue = 4. * XValueForfMax *
            exp(-2. * XValueForfMax);
 
    G4double R(-1.);
 
    do
    {
        G4double aRandomfValue = fMaxValue*G4UniformRand();
 
        G4double sign;
        if(G4UniformRand() > 0.5)
        {
            sign = +1;
        }
        else
        {
            sign = -1;
        }
 
        R = (expectationValue * G4UniformRand() )+ sign*3*sigma* G4UniformRand();
        G4double f = 4* R * exp(- 2. * R);
 
        if(aRandomfValue < f)
        {
            break;
        }
    }
    while(1);
 
    G4double Rnano = R *10* nanometer;
 
    G4double costheta = (2*G4UniformRand()-1);
    G4double theta = acos (costheta);
    G4double phi = 2*pi*G4UniformRand();
 
    G4double xDirection = Rnano*cos(phi)* sin(theta);
    G4double yDirection = Rnano*sin(theta)*sin(phi);
    G4double zDirection = Rnano*costheta;
    G4ThreeVector RandDirection(xDirection, yDirection, zDirection);
 
    return RandDirection;
}